RetrogeneDB ID:
retro_ecab_80
Organism:
Horse ( Equus_caballus )
Location:
23:38599079-38599475 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
84.73 %
Coverage:
99.24 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_80
GCCCTGGAAGGCATCGCTGCTGGAGGTGTAATGGACGTCAACGGCACCTTCCAAGAGGAG
CTGAAGACCGCCCTCATCCACGACGGCCTGCCACACCGGATCCGCGAAGCTGCCAAGGCC
CTAGACAAGCGCCAAGCTCATCTTTGTGTGCTTGCATCCAACTGCGACGAGCCTGTGTAT
GTGAAGTCGGTGGAGGTCCTTTGTGCCCAACACCAGATCAGCCTGATTAAGGTTGATGAC
AACAAAAAACTAGGGGAATGGGCAGGCCTCTGCAAAACTGACCGAGGGGGAATGCCCCAG
AAAGTGGCTGGTTGCAGTTGTGTAGTGGCGAAGGACTATGGCAAAGAGTCTCAGGCCAAG
GATGTCATCGAGGAGTACTTCAAATGTAAGAAATGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 1.39
SRP021940_cerebellum 0.6
SRP021940_embryo 2.35
SRP021940_placental_villous 0.54
SRP021940_synovial_membrane 1.95
SRP021940_testis 0.47

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
AEEGIAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPR
A.EGIAAGGVMDVN...QE.LKTALIHDGL...IREAAKALDKRQAHLCVLASNCDEP.YVK.VE.LCA.HQI.LIKVDDNKKLGEW.GLCK.DR.G.P.
Retrocopy
ALEGIAAGGVMDVNGTFQEELKTALIHDGLPHRIREAAKALDKRQAHLCVLASNCDEPVYVKSVEVLCAQHQISLIKVDDNKKLGEWAGLCKTDRGGMPQ


Parental protein
KVVGCSCVVVKDYGKESQAKDVIEEYFKCKK
KV.GCSCVV.KDYGKESQAKDVIEEYFKCKK
Retrocopy
KVAGCSCVVAKDYGKESQAKDVIEEYFKCKK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide