RetrogeneDB ID:
retro_ecab_800
Organism:
Horse ( Equus_caballus )
Location:
4:5756028-5756265 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
56.96 %
Coverage:
79.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
HMGN1
Parental gene aliases:
No gene alias available
Parental gene description:
high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:4984]

Genomic region (view in browser)





>retro_ecab_800
GCCCGCCCTGCAGGCAGGTGGCCCAAGAGGAAGGTGGAAATGATGCCCAAAAAGGCAGCA
GGAAAGGATAAATCTTCACCCAAAAAAGTGCAAACAAAAGGGAAAAGGGGAGCAAAGGGA
AAACAGGCCGAAGTCGTTAACCAAGAAGCTGAAAAAGACTTACCTGCAGAAAACAGAGAG
ACTGGAAACGAGGAGAGTGCAGCCTCTGATGAAGCAGGAGAGAAAGAAGCCAAGTCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.0
SRP021940_embryo 0.05
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ARLSAKPAPAKVETKPKKVAGKDKSSDKKVQTKGKRGAKGKQAEVANQETKEDLPAENGETKNEESAASDEAGEKEAKS
AR........KVE..PKK.AGKDKSS.................EV.NQE...DLPAEN.ET.NEESAASDEAGEKEAKS
Retrocopy
ARPAGRWPKRKVEMMPKKAAGKDKSSXXXXXXXXXXXXXXXXXEVVNQEAEKDLPAENRETGNEESAASDEAGEKEAKS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide