RetrogeneDB ID:
retro_ecab_802
Organism:
Horse ( Equus_caballus )
Location:
4:19792127-19793509 (-)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
94.16 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0
Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
Elongation factor 1-alpha [Source:UniProtKB/TrEMBL;Acc:F7BQJ6]
Genomic region (view in browser)
>retro_ecab_802
ATGGGCAAAGAGAAGACCCATATCAATACTGTCGTCATTGGCCATGTGGATCTGGCAAGT
CCACCACCATCGGGCACCTCATCTACAAGTGTGGGGGCATTGACAAGAGAACCATCGAGA
AGTTTGAGAAGGAAGCAGCAGAGATGGGCAAGGGCTCCTTCAAGTACGCCTGGGTGCTGG
ACAAGCTGAAGGCAGAGAGAGAACGTGGCATCACCACAGACATCTCCCTGTGGAAGTTTG
AAACCAGCAAATACTACATCACCATCATTGATGCCCCAGGCCACAGGGATTTCATCAAGA
ACATGATTACTGGCACTTCCCAGGCCGACTGCACCGTGCTCATCGTGGCCGCTGGCGTGG
GCGAGTTTGAGGCTGGCATCTCCAAGAACGGGCAGACCCGTGAGCATGCGCTACTGGCCT
TTACGCTGGGTGTGAAGCAGCTCATCGTGGCTGTCAACAAGATGGACTCAACTGAGCCTG
CCTACAGCGCCGCGCGCTTCCAGGACATCACCAAGGAAGTGAGCGCCTACATCAAGAAGA
TCGGCTACAACCTGGCCACCCTGGCCTTCGTGCCCATCTCGGGCTGGCACGGCGACAACA
TGCTGGAGCCCAGCACCAACATGCCCTGGTTCAAGGGCTGTAAGGTGGAGAGGAAAGAGG
GAAACGCCACCGGGGTGACTCTGCCGGAAGCTCTGGACTCCATCCTCCTGCCCACTCGCC
CGGTCAACAAGCCTCTGAGGCTGCCTCTGCAAGACGTGTACAAGATTGGAGGCATTGGCA
CTGTGCCTGTAGGCCGCGTGGAGACCGGCTTCCTGAAACCTGGGATGGTGGTCACCTTTG
CCCCCAGCAACCTCACCACCGAGGTCAAGTCTGTGGAGATGCACCACGAAGCCCTGACTG
AGGCCCTGCCTGGTGACAACGTGGGCTTCAACGTCAAGAATGTGTCTGTGAAGGACATCC
ATCGTGGAAATGTGGCTGGAGCCAGCAAGAACGACCCCCTCATAGAGGCTGGCAGCTTTG
TGGCACAGGTGATCATCTTGAACCACCCTGGGCAGATCCACGCCGGCTATACCCCAGTGC
TGGACTGCCATACAGCCCACATCTCTTGCAAGTTTGCTGAATTGAGGGAAAAGATTGACA
GGCGCTCAGGCAAGAAGCTGGAGGAAAACCCCAGGGCCCTGAAGTCGGGCGATGCAGCGA
TGGTGCAGATGGTCCCCAGCAAGGCCATGTGTGTGGAAACTTTCTCTGAGTACCCACCTC
TAGGCCGTTTTGCTTTGCGGGACATGAGCCAAACAGTGGCTGTTGGAGTCATCAAGACAG
TGGATAAGAAGTCAACCACAGCTGGCAAGGTCACCAAGTCAGCAGTAAAGGCGAGCAAGA
AG
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.05 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.0 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
