RetrogeneDB ID:
retro_ecab_803
Organism:
Horse ( Equus_caballus )
Location:
4:21688416-21688673 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
80.46 %
Coverage:
93.48 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_803
AAGTGCTCCAAGGTCAGTAAATACGGGACCCGTTACGGTGCCTCCCTCAGGAAAATGGTG
AAAAAATTGAGATCTGCCAGCATGCTAAGTATGCTTGCACTTTCTGTGGCAAAACCAAGA
TGAAGAGATGAAGTGTGGGGATCCAGCACTATGGATCCTGCCTGAAAACAGTAGCCGGTG
GTGCCTGGACCCAAGACACCACTTCTGCTGTCACACTAAAGTCAGCCATCAGAGAACTGA
AGGAACTGAAAGACCAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KVGIVGKYGTRYGASLRKMVKK-IEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ
K...V.KYGTRYGASLRKMVKK.IEI.QHAKY.C.FCGKTKMKR..VGI.H.GSC.KTVAGGAWT..TTSAVT.KSAIR.LKELKDQ
Retrocopy
KCSKVSKYGTRYGASLRKMVKK/IEICQHAKYACTFCGKTKMKR*SVGIQHYGSCLKTVAGGAWTQDTTSAVTLKSAIRELKELKDQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide