RetrogeneDB ID:
retro_ecab_804
Organism:
Horse ( Equus_caballus )
Location:
4:25942519-25942758 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.6 %
Coverage:
52.98 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
RPS13
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S13 [Source:HGNC Symbol;Acc:10386]

Genomic region (view in browser)





>retro_ecab_804
ATGGGTCACATGCATGCTCCTGGGAATAGCTTGTCCCAGTAGGCTTGCCCCTCTGCCACA
GCATCCCCACCTGGCTGAAGTTGATGTCTGATGACACAAAAGAGTAGATCTACAAACTGG
CCAATAAGGGCCTGACTCCCTCACAAATTGATCTGGTCCTGAGAAACTCACATGGCACTG
CACAAGTATGTTTTGTGAAAGGCAATAAAACCTTGATAATTCTTAAGTACAAAGGACTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGRMHAPGKGLSQSA-LPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGL
MG.MHAPG..LSQ.A.LP...S.PTWLKL.SDD.KE.IYKLA.KGLTPSQI...LR.SHG.AQV.FV.GNK.L.ILK.KGL
Retrocopy
MGHMHAPGNSLSQ*A/LPLCHSIPTWLKLMSDDTKE*IYKLANKGLTPSQIDLVLRNSHGTAQVCFVKGNKTLIILKYKGL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide