RetrogeneDB ID:
retro_ecab_806
Organism:
Horse ( Equus_caballus )
Location:
4:30533767-30534044 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
81.72 %
Coverage:
55.09 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
GTSF1
Parental gene aliases:
No gene alias available
Parental gene description:
gametocyte specific factor 1 [Source:HGNC Symbol;Acc:26565]

Genomic region (view in browser)





>retro_ecab_806
ATAGAGAATATGTACATTGATTCTCTGAATCCTGAAAATCTATTACAACGGCCCTATGAT
AAAAACCGCTAGATCAGGGCCTGCAGGTTTCCTTATCATCTTGTTAAGTGCAGAAAGAAT
CATCCTGATGTCGCAAACAAATTCATTACTTGGTCCTTTCAGTGCTTGCCACCAAGTTCC
TCGGGCTGAAATCAGTCATCGTATCTCAAGCTGTGAGGACAAAAGTTGTATTGAGCAAGA
TGTTGTCAAGCAAACCAGGAACCTTGGACAAGAGACT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MEKTYIDSLDPEKLLQCPYDKNHQIRACRFPYHLVKCRKNHPDVANKLATC-PFNARHQVPRAEISHHISSCDDKSCIEQDVVNQTRNLGQET
.E..YIDSL.PE.LLQ.PYDKN..IRACRFPYHLVKCRKNHPDVANK..T..PF.A.HQVPRAEISH.ISSC.DKSCIEQDVV.QTRNLGQET
Retrocopy
IENMYIDSLNPENLLQRPYDKNR*IRACRFPYHLVKCRKNHPDVANKFITW\PFSACHQVPRAEISHRISSCEDKSCIEQDVVKQTRNLGQET


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide