RetrogeneDB ID:
retro_ecab_807
Organism:
Horse ( Equus_caballus )
Location:
4:31874048-31875299 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
86.67 %
Coverage:
50.24 %
Frameshifts:
0
Stop codons:
2
Parental gene:
Parental gene symbol:
CDCP1
Parental gene aliases:
No gene alias available
Parental gene description:
CUB domain containing protein 1 [Source:HGNC Symbol;Acc:24357]
Genomic region (view in browser)
>retro_ecab_807
TGCACGGACCACCGGTACTGCCACAAGAAGTCTTACCCACTCCGGGTGCCCAGCAACATC
CTCCAGCTGGCTGTGCAGCTGCACAGCTTCTCCTGGAAGCTGCTGGTGCCCAAGGACAGT
CTCAGCCTGGCACGGGTGCCAGTCCAGAAGCTGCAGCAGCACTCACACAAGAGGGCCTGC
AACACCAGCTTCAGCTACTTCGTGGCCAGTGCTGTTCCCGGCCAGGACCTTTACTTCTGC
TCCGGAGGCTCCAGTGAGCAGATCCAGGTGAAGCAGAACATCTCGGTGACTCTCCACACC
TTTGCCTCCAGCTTCCAACAGGATGTCTCCAGGCAGGGCCTGACCGTGTCCTTTAGACCG
TACTTCACAGAGGAAGCTGTTTTCACTGTGACCCTGGACATGAAAAGCAAGGTCTATCTG
AGGACCCCTAACTGGGACTGGGGCCTGCTGTCCCTCGCCTCGGTGTCCTGGAACATCAGT
GTGCCCAGAGACCAGGTGGCCTGCCTGACCTTCTTAAAGGAGTGGACTGACCTGGTCTGC
CAGACAGGGCGTGCATTCATGATCATCCAGGAGCAGCGGATGTGGGCTGAGGAGATCTTT
AGCCTGGAGGATGTGCTCCCCAAGCCAAGATTCCACCATCATGGTTTCTGGGTCAACATC
TCCAATTGCAGCCCTGTGAGCAGCAAGCAGCTGGACATGCTCTTCTGGGTGTCACTTTCC
CTGAGGACAACGGACGTGACTGTTGTCATCATTGCAGTGGTGGGAGGTGGCGCCTTACTG
ATGTTTGCCCTCGGACTCATCATTTGCCTCGTGAAAAAGAAGAGGAAAAAGGAGATAAAC
AAGGGCCCGGCCGTAGGTATCTACAATGGCAATGTCAATACCTAGACGCTGATGCAGCCA
AAAAAGTTTCAGAAGAGGTGAAAGGACAATGACTCCCATGTGTATGCAGTCATCGATGAC
ACTATGGTATATGGGCATCTGCTGCAGGATTCCAACAGGTCCTTCCTCCAGCCAGAGGTG
GACACCTACCAGCCCTTCCAGGGCCCCATGGGGGACTGCCCTCCCTCCCCACCCCCCGTA
TGCTCCAGGGCCCCGACTGTAAAGTTGATCATAGATGAACCACCCCCTGACATTCCTCCT
GAGTCTGAGAGCAAACCATGCATCTTCTCCCACCCCAACATAGAGAATGTAAGCAACGGG
AACACAGACATTCCCTTGCTGGATGCCCACAAGCCAGTGGAGCCGGGGGAA
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.05 |
| SRP021940_embryo | 0.02 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.03 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
