RetrogeneDB ID:
retro_ecab_808
Organism:
Horse ( Equus_caballus )
Location:
4:37632710-37633552 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
90.81 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
ESD
Parental gene aliases:
No gene alias available
Parental gene description:
esterase D [Source:HGNC Symbol;Acc:3465]

Genomic region (view in browser)





>retro_ecab_808
ATGGCATTGAAACAGATTTCCAGCGACAAGTGCTTTGGGGGATTGCAGAAAGTTTTTGGA
CATGACAGTGTTGAACTGAAGTGCAAATGAAATTTGCAGTCTATTTACCACCAAAGGCAG
AAACTGGAAAATGCCCTGCATTATACTGGCTGTCTGGTTTAACTTGCACAGAGCAAAATT
TTATATCAAAATCTGGTTATCATCAGGCTGCCTCAGAACATGGCCTTGTTATCATTGCTT
CAGATACCAGCCCTTGTGGCTGCAATATTAAAGGAGAAGATGAGAGCTGGGACTTTGACA
CTGGTGCTGGGTTTTATGTGGATGCCACTGAAGATCCTTGGGAAACTAACTATAGGATGT
ACTCTTATGTAACAGAGGAGCTTCCCCAACTCATAAACGCCAATTTTCCAGTGCACCCCC
AAAGGATGTCTATTTTTGGCCACTCCCTGGGAGGCCATGAGGCTGTGATTTGTGCTTTGA
AGAATCCTGGAAAATACAAATCTGTGTTGGCATTTGCTCCAATTTGCAACCCAGTGCTCT
GTGCTTGGGGCAAAAAAGCCTTTAGTGGATATTTGGGAACAGATCAAAACAAATTGAAGG
CTTATGATGCTACCCATCTTGTGAAGGCCTATCCAGATTCTCAGCTGGACATACTAATTG
ATCAAGGAAAAGAGGACCAGTTTCTTTCAGATGGACAGTTACTACCTGGTAACTTCATAG
CTGCCTGTACAGAAAAACTCCCTGTTGTTTTTAGATTACAAGAGGGTTATGATCACAGCA
ACTACTTCATCGAAACCTTTATTGCTGACCACATCAGACGTCATGCAAAGTACCTGAACT
CA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MALKQISSNKCFGGLQKVFEHDSVELNCK-MKFAVYLPPKAETGKCPALYWLSGLTCTEQNFISKSGYHQAASEHGLVVIAPDTSPRGCNIKGEDESWDF
MALKQISS.KCFGGLQKVF.HDSVEL.CK.MKFAVYLPPKAETGKCPALYWLSGLTCTEQNFISKSGYHQAASEHGLV.IA.DTSP.GCNIKGEDESWDF
Retrocopy
MALKQISSDKCFGGLQKVFGHDSVELKCK/MKFAVYLPPKAETGKCPALYWLSGLTCTEQNFISKSGYHQAASEHGLVIIASDTSPCGCNIKGEDESWDF


Parental protein
GTGAGFYVDATEDPWKTNYRMYSYVTEELPQLINANFPVDPQRMSIFGHSMGGHGALICALKNPGKYKSVSAFAPICNPVLCPWGKKAFSGYLGTDQNKW
.TGAGFYVDATEDPW.TNYRMYSYVTEELPQLINANFPV.PQRMSIFGHS.GGH.A.ICALKNPGKYKSV.AFAPICNPVLC.WGKKAFSGYLGTDQNK.
Retrocopy
DTGAGFYVDATEDPWETNYRMYSYVTEELPQLINANFPVHPQRMSIFGHSLGGHEAVICALKNPGKYKSVLAFAPICNPVLCAWGKKAFSGYLGTDQNKL


Parental protein
KAYDATHLVKSYPGSQLDILIDQGKEDQFLSDGQLLPDNFITACTEKKIPVVFRLQEGYDHSYYFIATFIADHIRHHAKYLNA
KAYDATHLVK.YP.SQLDILIDQGKEDQFLSDGQLLP.NFI.ACTE.K.PVVFRLQEGYDHS.YFI.TFIADHIR.HAKYLN.
Retrocopy
KAYDATHLVKAYPDSQLDILIDQGKEDQFLSDGQLLPGNFIAACTE-KLPVVFRLQEGYDHSNYFIETFIADHIRRHAKYLNS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide