RetrogeneDB ID:
retro_ecab_809
Organism:
Horse ( Equus_caballus )
Location:
4:45454402-45454559 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
52.73 %
Coverage:
58.24 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
LSM5
Parental gene aliases:
No gene alias available
Parental gene description:
LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17162]

Genomic region (view in browser)





>retro_ecab_809
ACACTTCTAGGATTTAATGAATTTGTCAATATGTTACTGGAAATGCCAATGAATTTACAA
CCTCTTTGGAAAGAGGGATAATTGCCAGTTAAAGTATATTTGGCCAAGTGGAAATAACAT
GACAATGCTGGTTCCCAGGGAATAAGGACCTGAGGTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TLLGFDDFVNMVLE-DVTEFEITPEGRRIT-KLDQILLNGNNITMLVPGGEGPEV
TLLGF..FVNM.LE....EF....E...I...L..I...GNN.TMLVP...GPEV
Retrocopy
TLLGFNEFVNMLLE/NANEFTTSLERGIIA/QLKYIWPSGNNMTMLVPRE*GPEV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide