RetrogeneDB ID:
retro_ecab_810
Organism:
Horse ( Equus_caballus )
Location:
4:50306245-50307660 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
90.7 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_810
ATGGTGGCAGGCAAAGTTGCAATGGCTATGGGGCAGCCGCATCTTTCTCGCCAGGGTCTG
GCCAACTTGGATGTTACCAAGTTGACTCCTCTCTCTCACAAAGTTATCAGCAGACAAGCC
ACAATTAACATAGGTACAATTGGTCATGTTGCTCATGGAAAATCTACAGTTGTAAAAGCT
ATTTCTGGAGTTCACACTGTCAGGTTCAAAAATGAACTGGAAAGAAATACTACAATCAAG
CTTGGATATGTGAATGCCAAGATTTATAAACTTAATGATGCAAGTTCTCCTCGACCAGAA
TGCTACAGATCCTGTGGAAGCAGTACACCTGATGAATTTCCTTCAGACATTCCAGGGACC
AGAAGGAACTTTAGACTTGTCAGACATGTTTCCTTTGTTGACTGTCCTGGCCATGATATT
TTGATGGCTATTATGCTGAATGGTGCAACAGTGATGGATGCAGCTCTTTGGTTGATAGCT
GGTAATGAATCTTGTCCTCAACCTCAGACTTCTGAACACCTGGCTGCCATAGAAATTATG
AAGCTGAAACATATTTTGATTCTACAGAATAAAATTGATTTGGTAAAAGAAAGTCAGGCT
AAAGAACAGTATGAACAGATCCTTGCATTTGTACAAGGTACAGTAGAAGAAGCAGCTCCC
ATTATTCCAATTTCTGTACAGCTGAAATATAATATTGAAGTTGTCTGTGAGTATATTGCA
AAGAAAATTCCAGTACCTCTAAGAGACTTTACGTCAGAACCCCAACTTATTGTTATTAGG
TACTTTGCTGTCAACAAACCTGGCTGTGAGGTTGATGACCTTAAAGGTGGTAGGGCTGGT
GGTAGTATTTTAAAAGGAGTTTAAAGGTGGGCCAGGAGATAGAAGTCAGACCTGATATTG
TTTCCAAAGATAGTGAAGGAAAACTCATGTGTAAACCAATCTTTTCCAAAATTGTATCAC
TTTTTGCAGAACATAATGATCTTCAGTATGCTGCTCCACGGGGTCTTATTGGAGTTGGAA
CAAAAAGTGACCCCACTTTGTGCCGGGCTGATAGGATGGTGGGGCAGGTACTTGGTGCAG
TTGGAGCTTTACCAGAGATCTTCACAGAATTGGAAATTTCCTATTTCCTACTTAGACGGC
TCCTTGGTGTACGGACAGAGGAAGACAAAAAAGCAGCAAAGGTGCAAAAGCTGTCTAAGA
ATGAAGTGCTTATGGTGAACACAGGATCCTTGTCAACAGAAGGAAGAGTGAGTGCAGTTA
AGGCTGACTTGGGTAAAACGGTTCTCACTAATCCTGAATGCACGGAAGTAGGAGAAAAAA
TTGCCCTCAGCCAAAGAGTTGAGAAACACTGGTGTTTAATTGGTTGGGGTCAGATAAGAA
GAGGAGTAACCATCAAGGCAACAGTAGCTGATGAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 3.6
SRP021940_cerebellum 0.0
SRP021940_embryo 10.11
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 3.18
SRP021940_testis 1.54

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAGGEAGVTLGQPHLSRQDLATLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPE
M..G......GQPHLSRQ.LA.LDVTKLTPLSH.VISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERN.TIKLGY.NAKIYKL.D.S.PRPE
Retrocopy
MVAGKVAMAMGQPHLSRQGLANLDVTKLTPLSHKVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNTTIKLGYVNAKIYKLNDASSPRPE


Parental protein
CYRSCGSSTPDEFPTDIPGTKGNFRLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQA
CYRSCGSSTPDEFP.DIPGT..NFRLVRHVSFVDCPGHDILMA.MLNGA.VMDAAL.LIAGNESCPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQA
Retrocopy
CYRSCGSSTPDEFPSDIPGTRRNFRLVRHVSFVDCPGHDILMAIMLNGATVMDAALWLIAGNESCPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQA


Parental protein
KEQYEQILAFVQGTVAEGAPIIPISAQLKYNIEVVCEYIVKKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGV-LKVGQEIEVRPG
KEQYEQILAFVQGTV.E.APIIPIS.QLKYNIEVVCEYI.KKIPVP.RDFTSEP.LIVIR.F.VNKPGCEVDDLKGG.AGGSILKGV.LKVGQEIEVRP.
Retrocopy
KEQYEQILAFVQGTVEEAAPIIPISVQLKYNIEVVCEYIAKKIPVPLRDFTSEPQLIVIRYFAVNKPGCEVDDLKGGRAGGSILKGV/LKVGQEIEVRPD


Parental protein
IVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVGTKIDPTLCRADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLS
IVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAP.GLIGVGTK.DPTLCRADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTE.DKKAAKVQKLS
Retrocopy
IVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPRGLIGVGTKSDPTLCRADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEEDKKAAKVQKLS


Parental protein
KNEVLMVNIGSLSTGGRVSAVKADLGKIVLTNPVCTEVGEKIALSRRVEKHWRLIGWGQIRRGVTIKPTVDDD
KNEVLMVN.GSLST.GRVSAVKADLGK.VLTNP.CTEVGEKIALS.RVEKHW.LIGWGQIRRGVTIK.TV.DD
Retrocopy
KNEVLMVNTGSLSTEGRVSAVKADLGKTVLTNPECTEVGEKIALSQRVEKHWCLIGWGQIRRGVTIKATVADD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide