RetrogeneDB ID:
retro_ecab_811
Organism:
Horse ( Equus_caballus )
Location:
4:52147629-52148038 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
78.42 %
Coverage:
52.09 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
60S ribosomal protein L6 [Source:UniProtKB/TrEMBL;Acc:F6QF58]

Genomic region (view in browser)





>retro_ecab_811
CCACTTGGTGGTGACAAGAATGGTGGTACTCAAGTGGTTAACTTCACAAAATACCTAGAT
ATTATCCTACTGAAGATGTGCCTGAAAAGCTATTGAGCCACTTCAAAAATCCCTTCAGTC
AGCATGTGAGAAAACTCCAAGCTAACATCACTCCCAGGACAATTCTGATCATCCTCACTG
GGCACCACAGAGGCAAGAGGGTGATTTTCCTGAAGCAGCTGAGCAGTGGCTTGCTACTTT
TGACTGGGCCTCTGATCCTCAGTTGAGTTCCTCTGTGTAGAACACACCAGAAATTTGTCA
TCTCTACCTCCACCAAAATTGATATCAGTAATGTGAAAATCCCACAATATCTCACGATGC
TTACTTCAGAAAGAAGAAGCTTGGTAAGTCCAGACACCAGGAATGTGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PVGGDKNGGTRVVK-LRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTGPLVLNRVPLRRTHQKF
P.GGDKNGGT.VV..L.K.PRYYPTEDVP.KLLSH.K.PFSQHVRKL.A.ITP.TILIILTG.HRGKRV.FLKQL.SGLLL.TGPL.L..VPL.RTHQKF
Retrocopy
PLGGDKNGGTQVVN/LHKIPRYYPTEDVPEKLLSHFKNPFSQHVRKLQANITPRTILIILTGHHRGKRVIFLKQLSSGLLLLTGPLILS*VPLCRTHQKF


Parental protein
VIATSTKIDISGVKIPKHLT-DAYFKKKQLRKPRHQEGE
VI.TSTKIDIS.VKIP..LT.DAYF.KK.L.K.RHQE.E
Retrocopy
VISTSTKIDISNVKIPQYLT/DAYFRKKKLGKSRHQECE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide