RetrogeneDB ID:
retro_ecab_812
Organism:
Horse ( Equus_caballus )
Location:
4:52224529-52224881 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
67.2 %
Coverage:
98.4 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
RPL31
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L31 [Source:HGNC Symbol;Acc:10334]

Genomic region (view in browser)





>retro_ecab_812
CCCACAAATAAAAGTGGCAAGAAGAAGGGCCATTTTGCCAACAATGAGGTGGTGACCAGA
GAATACACCATTGGCATTCATAAGTGCATCCATAGAGTGGGCTTTAGAAATGTGCTCCTC
AGGCACTCAAAAAATTTGCCATGAAGGAGAAGGGAACTCCAGATGTGCACATTGACACCA
GACTCAACTGATCTGTCTGGGCCAAAGGAATAAGCAATGTCCTATACTGTACCCATGTGT
AGTTGTTCAGAAAACATGAGGGTGGACATTCACTAAACATGTTCTATACGTTGGTTACCT
ACATAATTGTCACACTTTCAAAAATCTACAGACAGTCAGTATGGATGAGAAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.41
SRP021940_cerebellum 0.0
SRP021940_embryo 0.12
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.05
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFK-KRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNK
P..K.G.KKKG..A.NEVVTREYTI.IHK.IH.VGF..K.AP.ALK...KFAMKE.GTPDV.IDTRLN..VWAKGI.NV.Y...V.L.RK..E...S.N.
Retrocopy
PTNKSG-KKKGHFANNEVVTREYTIGIHKCIHRVGFR/KCAPQALK---KFAMKEKGTPDVHIDTRLN*SVWAKGISNVLYCTHV*LFRK-HEGGHSLNM


Parental protein
LYTLVTYVPVT-TFKNLQTVNVDEN
.YTLVTY..VT.TFKNLQTV..DEN
Retrocopy
FYTLVTYIIVT/TFKNLQTVSMDEN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide