RetrogeneDB ID:
retro_ecab_817
Organism:
Horse ( Equus_caballus )
Location:
4:66911765-66912004 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.08 %
Coverage:
74.55 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
SRP14
Parental gene aliases:
No gene alias available
Parental gene description:
signal recognition particle 14kDa (homologous Alu RNA binding protein) [Source:HGNC Symbol;Acc:11299]

Genomic region (view in browser)





>retro_ecab_817
ACCCTGAAGAGGTATGATGGTCAAACTATACTCATTCCAAGAAAAGGGTCTGTGGAGGGT
TTTAAGCCCTGAGACAACCATTGTCTGTTAAGAGCTGCTGTTGGGAAGAAGCAGCTCAGC
ACTGTGGTGAGCTCCAAAGAATGAGTGAGTTTCAGATGGCTTATTCGAACCTATCGAGAG
CTTACATGGATGGGCTGAACGAGAGGGACAGCAAGAGAAAGAGGGGCAAAGCAGCACAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TLKKYDGRTKPIPRKGSVEGFEPSDNKCLLRATDGKKKISTVVSSKE-VNKFQMAYSNLLRANMDGLKKRDKKSKSKKSKAAQ
TLK.YDG.T..IPRKGSVEGF.P.DN.CLLRA..GKK..STVVSSKE....FQMAYSNL.RA.MDGL..RD..SK.K..KAAQ
Retrocopy
TLKRYDGQTILIPRKGSVEGFKP*DNHCLLRAAVGKKQLSTVVSSKE/MSEFQMAYSNLSRAYMDGLNERD--SKRKRGKAAQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide