RetrogeneDB ID:
retro_ecab_819
Organism:
Horse ( Equus_caballus )
Location:
4:84307775-84307982 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.75 %
Coverage:
57.85 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
RPA3
Parental gene aliases:
No gene alias available
Parental gene description:
replication protein A3, 14kDa [Source:HGNC Symbol;Acc:10291]

Genomic region (view in browser)





>retro_ecab_819
ATGTAGCAGGTGATGGAGTTGGCCAAGGCGCACATCTCACCAGCTTGCTAGCTCAGTACA
TCGACTGCCCATCTGCTTCATGGGAGGCTGGAAAAGATTCATCCCACTGGAATAATGTTA
ATTCTTTCAGACAGAGAAGGAAAAAAAGAAACCGATGAATTGATGGAGCCCCTTGATGAA
GAAATCTCTAGAATAGCACTTATTCTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MADVMELPKSRIN-ASLLAQFID-RPVCFVG-RLEKIHPTGKMFILSDGEGKNVTIELMEPLDEEISGIVEVV
M..VMEL.K..I...SLLAQ.ID..P.CF.G.RLEKIHPTG.M.ILSD.EGK..T.ELMEPLDEEIS.I....
Retrocopy
M*QVMELAKAHIS/TSLLAQYID/LPICFMG/RLEKIHPTGIMLILSDREGKKETDELMEPLDEEISRIALIL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide