RetrogeneDB ID:
retro_ecab_820
Organism:
Horse ( Equus_caballus )
Location:
4:86214808-86215126 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.49 %
Coverage:
97.37 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_820
GTCTCTGAGCTTCGCTGAATCTACTTGGCTCTCAGCCTGCAGGGTGATGAGCTGACACTG
ACAGAGGATAAGATCAATGCCCTTGTCAAAGTAGCTGGTGTAGACGTGCAACCTTTCTAG
CCTGGCTTGTTTGCAAAGGCCCTGGCCAAGGTCCACAATGGGAGCCTCACTGCAGTCGGA
GCTGTGGCCCTGCCCCATTGGGGGTGTGGAATGGGGGTCCTGCCTCCTCCAGCACTGCTG
CCCCGGAGAAGAAAGTGGAGGCAAAGAAAGAAGAATCTGAGGGGTCCGATGATGACATGG
GCTTTTAGTCTTTTTGAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VSELACIYSALILHDDKVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVSIGSLI-CNVGAGGPPPPAGAAPAGGPAPSTAAAPAEEKKVEAKKEESE
VSEL..IY.AL.L..D..T.TEDKINAL.K.AGV.V.PF.PGLFAKALA.V..GSL..C....G..P.P.G....GGPA.S..AAP..EKKVEAKKEESE
Retrocopy
VSELR*IYLALSLQGDELTLTEDKINALVKVAGVDVQPF*PGLFAKALAKVHNGSLT/CSRSCG--PAPLGVW-NGGPASSSTAAP--EKKVEAKKEESE


Parental protein
ESDDDMG-FGLFD
.SDDDMG.F.LFD
Retrocopy
GSDDDMG\FSLFD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide