RetrogeneDB ID:
retro_ecab_821
Organism:
Horse ( Equus_caballus )
Location:
4:89597773-89598496 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
51.63 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_821
AAAGAAGTAGAAGACCTAAAAAGAAACCAAAAGGAAATTCTGGAGTTGAAAAGTATATTT
ACTGAAACAAAAAATTCACTTGAGGGATTCAGAGGCAGATTTGAGCAGGCAGAAGAAAGA
ATCAGCAAACTTGAAGATAAGACAATGGAAATGATCAAATCTGAGGAACAGAAAGAAAAA
GAGTTGAAGAAAAGGAAACAGAAGCTAAGGGACGTGTGGGACACCATTAAGTGGACTAGT
ATATGCATTGACAGAGTTTCAGGAGGAGAAGAGAGAAGGGCACAGAGAGAATATTTGAAG
AAACCACAGCTGAAAACTTGCCAAATTTGATGAAAGATGTGAATATAAACATCCAGGAAG
CTCAACAAGCTCTACATAATATGAACTCAAAGAGACCCACACCAAGATGCGTTGTAGTCA
AACATTGAAAAGACAAAGACAAAGAAAGAATCTTGAAAGCAGCAAGAGAAATGAATCATC
ACATACACGGGATCCTCAGTAAGATTGTGAGCAAATTTCTCTTCAGAAATGTTGGAGGCC
AGAAGAGAGTGGGCTAATATATTCAAAATGCTAATGAAAAAAAGCTGTGAACTAAGAATC
CTATATCCAGCAAAACTGTCCTTCAAGAGTGAGGGAAAAATTAAGATATTCTCAGATAGA
CAAAAGCCAAGGGAGTTTGTGACCTCTAAACCTGTCCTGCAAGAAATGCTCAAGGGAATG
CTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.14
SRP021940_placental_villous 0.09
SRP021940_synovial_membrane 0.1
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KELENIKKNQS---EMKNTILEMKNSLEGLNSRVDDTEEWISKLDERLEEVIQAAQIKEKGIKKNKDSVRDLWNNIKHANIHIIRVPEGGE-RDKGTEKL
KE.E..K.NQ....E.K....E.KNSLEG...R....EE.ISKL.....E.I.....KEK..KK.K...RD.W..IK...I.I.RV..GGE.R.KGTE..
Retrocopy
KEVEDLKRNQKEILELKSIFTETKNSLEGFRGRFEQAEERISKLEDKTMEMIKSEEQKEKELKKRKQKLRDVWDTIKWTSICIDRV-SGGE/REKGTERI


Parental protein
FEEIIA-NFPNLRKGTDIQTQEAQRAPNKINPKRPTPRHIIIKMSVIKDKERFLKATRERKQN-LTSRGSSIRFSADFPSETLEARRQWAGIFKVLKEKN
FEE..A.N.PNL.K...I..QEAQ.A....N.KRPTPR....K....KDKER.LKA...R..N..T..GSS.R..A.F.SE.LEARR.WA.IFK.L..K.
Retrocopy
FEETTAENLPNLMKDVNINIQEAQQALHNMNSKRPTPRCVVVKH*KDKDKERILKAA--REMN\ITYTGSSVRL*ANFSSEMLEARREWANIFKMLMKKS


Parental protein
CQPRILRPAKLPFKSEGDIRTFPN--KLGEFITTRPTLRETLKGVL
C..RIL.PAKL.FKSEG.I..F....K..EF.T..P.L.E.LKG.L
Retrocopy
CELRILYPAKLSFKSEGKIKIFSDRQKPREFVTSKPVLQEMLKGML


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide