RetrogeneDB ID:
retro_ecab_822
Organism:
Horse ( Equus_caballus )
Location:
4:94422290-94422709 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
79.43 %
Coverage:
92.72 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
RPS13
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S13 [Source:HGNC Symbol;Acc:10386]

Genomic region (view in browser)





>retro_ecab_822
ATGAGTCGCGTGCGCACTCCTGGGAAGGGCCTGTCCCACTCAGCTCTGCCCTGCCGCCGC
AGAATGCCTGCCTGGCTGAAGGTGACATCTGACGATGTGAAGGGGCAGATCTACAAACTG
GCCAAGAAGGGCCTGGCTCCCTCACAAATTGGTATGGTCCTGAGAGACTCACATGGCGTT
GCACAAGTATGTTTTGTGACAGGCAATAAAATCTTGAGAATTCTTAAGTCCAAAGGACTT
GCTCCTGATCTTCCTGAGCACCTCTAACATTTAATGAAGAAAGCTGTTGCTGTTGAAAGC
ATCTTGAGAAAAACAGAAAGCATAAGGATGCTAAATTTTGTCTGATTCTGATCGAGAGTC
GTAATCACCAGTTGGCTCAGTATTATAAGACCAAATGAGTCCCTCCCCACAACTGGAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.1
SRP021940_embryo 0.29
SRP021940_placental_villous 0.13
SRP021940_synovial_membrane 0.08
SRP021940_testis 0.24

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVR-
M.R...PGKGLS.SALP.RR..P.WLK.TSDDVK.QIYKLAKKGL.PSQIG..LRDSHGVAQV.FVTGNKILRILKSKGLAPDLPE.L.HL.KKAVAV..
Retrocopy
MSRVRTPGKGLSHSALPCRRRMPAWLKVTSDDVKGQIYKLAKKGLAPSQIGMVLRDSHGVAQVCFVTGNKILRILKSKGLAPDLPEHL*HLMKKAVAVE/


Parental protein
KHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWK
KHLE.NRK.KDAKF.LILIESR.H.LA.YYKTK.V.P.NWK
Retrocopy
KHLEKNRKHKDAKFCLILIESRNHQLAQYYKTK*VPPHNWK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide