RetrogeneDB ID:
retro_ecab_823
Organism:
Horse ( Equus_caballus )
Location:
4:98050475-98050955 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.94 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
PRDX5
Parental gene aliases:
No gene alias available
Parental gene description:
peroxiredoxin 5 [Source:HGNC Symbol;Acc:9355]

Genomic region (view in browser)





>retro_ecab_823
CCCCTGATTGAGGAGGGAGATGCCATCCTATCAGTGTTGGCATTTGAATGGGAGCCCGGT
AACAAGGTGACCCTGGTAGAGTTCAAGGACAAGAAGGGAGGGCTGTTTGGGGTCCCTGGA
GCCTTTATCCCCAACTGTTTCTGGACCCACCTGCGGAGGTCTGTGCAGCAGGCTGGGGCT
CTGAAGGCCTGGGTGATCCAAGTGGCGGCAGTTAGGAGTGTCAATGATGTCCTTGTGACT
GAAGAGTGGGGACCAGCCCATAACGTAGAAGGCAAGGCTTGGCTCTCAGCTGACCCCACG
GGGGCATTTGGGAAGGAGACAGATTTGTTACTAGATGATTCCTTGGTGTCCCTCTTTGGG
AACTGATGGCTCAAGAGGTTCTGCATGGTGATAGAGGATGGCAGAGTGAAGTCCCTGAAT
GGGGAGCTGGATGGCACAGGCCTCACCTGCAGCCTGGTCTCCAGCATCCTCTGCCTGCTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PPIKVGDAIPSVVVFEGDPANKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAAALKAKGVEVVACLTVNDVFVTEEWGRAHNTKGKVRLLADP
P.I..GDAI.SV..FE..P.NKV.L.E.FK.KKG.LFGVPGAF.P.C..THL...V.QA.ALKA....V.A...VNDV.VTEEWG.AHN..GK..L.ADP
Retrocopy
PLIEEGDAILSVLAFEWEPGNKVTLVE-FKDKKGGLFGVPGAFIPNCFWTHLRRSVQQAGALKAWVIQVAAVRSVNDVLVTEEWGPAHNVEGKAWLSADP


Parental protein
TGAFGKETDLLLDDSLVSLFGNRRLKRFSMVIEDGIVKSLNVEPDGTGLTCSLAPNIISQL
TGAFGKETDLLLDDSLVSLFGN..LKRF.MVIEDG.VKSLN.E.DGTGLTCSL...I...L
Retrocopy
TGAFGKETDLLLDDSLVSLFGN*WLKRFCMVIEDGRVKSLNGELDGTGLTCSLVSSILCLL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide