RetrogeneDB ID:
retro_ecab_824
Organism:
Horse ( Equus_caballus )
Location:
5:15333856-15334201 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.8 %
Coverage:
58.29 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_824
AACTCCATCAATGCTAAAAGACCTTCTCCAAGGCATATACTATTAAAACTGGCAAAAGTC
AACGACAAAGAAAAAACATTAAGGGCAGCAAGGGAGAAGAAAATAATCTACAAAGGAGCT
CCTATCAGGCTTTCAGCAGTTTTCAGCAGAAACCTTACAGGCTAGGAGAAAGTGGAATGA
TATATTCGAAATATTGAAAGACAAAAACTTTCAGCCAAGAATATTCTATCCAGTGAAATT
ATCCTTCAAATATGAAGGAGAAATAAAGGCTTTCCCAGACAAACAAAGCTGAGGGAGCTC
ATCACCACTAAGCCTGCCTTAAAGGACATGATGAAAGGAGCCCTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
NYINVERPSPRHILVKLAKLVMKEYIMAEAARQKKITYKGSPIRLSADFS-QTVQTRREWNDIIKILKYKNYPPRILYPVKLSFRYGREIKAFQDKQ-KL
N.IN..RPSPRHIL.KLAK...KE.....AAR.KKI.YKG.PIRLSA.FS..T.Q.RR.WNDI..ILK.KN..PRI.YPVKLSF.Y..EIKAF.DKQ.KL
Retrocopy
NSINAKRPSPRHILLKLAKVNDKEKTL-RAAREKKIIYKGAPIRLSAVFS\ETLQARRKWNDIFEILKDKNFQPRIFYPVKLSFKYEGEIKAFPDKQ/KL


Parental protein
REFITTRPPLQEMMKTAL
RE.ITT.P.L..MMK.AL
Retrocopy
RELITTKPALKDMMKGAL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide