RetrogeneDB ID:
retro_ecab_828
Organism:
Horse ( Equus_caballus )
Location:
5:38693368-38693621 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.52 %
Coverage:
64.39 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_828
CATCTTCGTGTGCTTGCATCCAACTGTAGAGAGCCTATGTGTGTCAAGTTAGTAGAGGCC
ATTTTGTCAAACACCAAATCAACTTAATCAATATTGATGACAGCAAGAAGCTAGGAGCAT
GTGTAGGCTTCTTTAAAACTGAGAGAAGAAAAACTGACATAAAGTGGTTGGTTGAAGTTG
TGTGATAGTTAAGGACTATGGCAGAGAATCTCAGGTTAAGGAGGTTATTGAAGAATACTT
TAAATTCCAAAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
HLCVLASNCDEPMYVKLVEALCA-EHQINLIKVDDNKKLGEWVGLCKIDREGKP-RKVVGCSCVVVKDYGKESQAKDVIEEYFKCKK
HL.VLASNC.EPM.VKLVEA.....HQINLI..DD.KKLG..VG..K..R......KVVG.SCV.VKDYG.ESQ.K.VIEEYFK..K
Retrocopy
HLRVLASNCREPMCVKLVEAILS/KHQINLINIDDSKKLGACVGFFKTERRKTD/HKVVG*SCVIVKDYGRESQVKEVIEEYFKFQK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide