RetrogeneDB ID:
retro_ecab_829
Organism:
Horse ( Equus_caballus )
Location:
5:39494118-39494538 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.03 %
Coverage:
79.44 %
Frameshifts:
0
Stop codons:
3


Parental gene:
Parental gene symbol:
DCTD
Parental gene aliases:
No gene alias available
Parental gene description:
dCMP deaminase [Source:HGNC Symbol;Acc:2710]

Genomic region (view in browser)





>retro_ecab_829
AAGATCAGAGCCTGAATCATGAATGCATAAAACATGATTGTAGGGACTGGGTACAACAGA
ATACCAAATGGGTACAGTGATGACCTCTTCCCTTAGAGGACAGCAGAGAGTAAGCCAGAT
ACCAAATACCTGTACATGTGCCGTGCCAAACTGAATGTCGTCATGAACAGAAATTCATCA
AGTATAAAAGGATGTACTATACATGTCACCTTGTCCCTATGCAATGAGTGTGTTAAACTT
ATCATCCAGACAGGTATAAAAGAAGTTATTTTCATGTCTGATAAATACCGTGATAGTTAT
GAGACAACAGCTGTGAGGTTCATATTTGACATGGCTGTGGTTACATTCAGGAACTTCACA
CTGAAGTGCAGCAAGATTGCTTTTGATTCATTTGGCAGTAGACCAAGTCAGGAGCTTCAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QVGACIVNAENKIVGIGYNGMPNGCSDDLLPWRRTAENKLDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDS
...A.I.NA.N.IVG.GYN..PNG.SDDL.P.R.TAE.K.DTKY.Y.C.A.LN..MN.NS...KGCT..V.L..CNEC.KLIIQ.GIKEVIFMSDKY.DS
Retrocopy
KIRA*IMNA*NMIVGTGYNRIPNGYSDDLFP*R-TAESKPDTKYLYMCRAKLNVVMNRNSSSIKGCTIHVTLSLCNECVKLIIQTGIKEVIFMSDKYRDS


Parental protein
DEATAARLLFDMAGVTFRKFTPKCSKIVIDFDSINSRPTQKPQ
.E.TA.R..FDMA.VTFR.FT.KCSKI...FDS..SRP.Q..Q
Retrocopy
YETTAVRFIFDMAVVTFRNFTLKCSKIA--FDSFGSRPSQELQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide