RetrogeneDB ID:
retro_ecab_83
Organism:
Horse ( Equus_caballus )
Location:
21:43218558-43219182 (+)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
64.93 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0
Parental gene:
Parental gene symbol:
TAF11
Parental gene aliases:
No gene alias available
Parental gene description:
TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa [Source:HGNC Symbol;Acc:11544]
Genomic region (view in browser)
>retro_ecab_83
ATGCTCAAGGCCAACACGTCGCTCTCGGACAAAGATGGGGACACAAGTGTGTCAGGTGAG
ATGCCAGCTGTCCCCATGGTCCTCGGGGCCAACGACAAGGACGGAATCCCTGGAGACCAA
TTTAGGGAATTGAAGGAAGCCTCTGAAGACGAAGGCGAGCTCCGGTGTCCGGACGGCTCA
GATCTAATGGCAGGTGAAAGGGAAGACGCCTCATTATTTCCTCCTGCAGCCAAAAGACTA
AAAAGAAATACCAAAACAGAGAAGGAGACGAAAGAGAAAGTGGATGAAGAGGAGGTTCAA
AGGATGAAAATCCTGCTGTCGTCTTTGAGCGAGGAGCAGCAGAATCGTTATGAAATGTAT
CGCCGGTCAGCTTTCCGGCAAGAAACCATGAGAAGTCTGATCCAGACCACAGCGGGCAGG
TCGGTGTCCCAGAACGTGGTCATTGCCATGTCCGGAATGGCCAAGGTCTTCGTCGGGGAG
GTGGTAGAAGAGGCCCTGGACGTGTGCGAGAGGTGGGGGGAAACGCCCCCACTCCAACCG
AAGCATCTGAGGGAGGCTGTTCGGAGGTTGAACTCGAAGGGGCAAATTCCCAACGTCAAG
GGCAAGAAGATCCTATTCTTCTAG
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.02 |
| SRP021940_placental_villous | 0.04 |
| SRP021940_synovial_membrane | 0.0 |
| SRP021940_testis | 0.18 |
Parental protein coverage
Changes in the retrocopy sequence
