RetrogeneDB ID:
retro_ecab_830
Organism:
Horse ( Equus_caballus )
Location:
5:39676626-39677138 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
77.46 %
Coverage:
95.56 %
Frameshifts:
1
Stop codons:
4


Parental gene:
Parental gene symbol:
DCTD
Parental gene aliases:
No gene alias available
Parental gene description:
dCMP deaminase [Source:HGNC Symbol;Acc:2710]

Genomic region (view in browser)





>retro_ecab_830
AAAAAAGGGGGTGACCACTTGGAATGGCCTAGATATTTCATGGCAGTGGCCTTCTTATCA
GCACAGAGACGCAAAGATTCAAATTCTCAGGTCAGAGCTTGAATTGTGAATGCAGAAAAC
AAGATTGTAAGGACAGGATAAAATGGAATGCCAAATGGGGGCAGTGATGACCTGTTCTCT
TAGAGGAGGACAGCAGAGAGTAAGCTGGATACCAAATACCCTTATGTGCGCCATGCCAAG
TTGAATGTCATCATGAACAAAATTTGGCAATTATAAAAGGCTGTACCATGTATGTTGCCT
TGTTCCCATGTAATGAATGTGCTCAGCTCATCATCTAGGCAGGTATAAAGGAAGTTATTT
TCATGTCTGGTAAATACCATGATAGTGATGAGACAACAGCTGCAAGGCTCATTTTTAATA
TGGCTGTGGTTACATTCAGGAAATTCACTAAGTTCAGCAAGATTTTCATTGACTTTGATT
CAATTAGCAGCGGACCAAGTCAGAAACTTCAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RKRDDYLQWPEYFMAVAFLSAQRSKDPNSQVGACIVNAENKIVGIGYNGMPNGCSDDLLPWRRTAENKLDTKYPYVCHAELNAIMNK-NSADVKGCTMYV
.K..D.L.WP.YFMAVAFLSAQR.KD.NSQV.A.IVNAENKIV..G.NGMPNG.SDDL...RRTAE.KLDTKYPYV.HA.LN.IMNK.N.A..KGCTMYV
Retrocopy
KKGGDHLEWPRYFMAVAFLSAQRRKDSNSQVRA*IVNAENKIVRTG*NGMPNGGSDDLFS*RRTAESKLDTKYPYVRHAKLNVIMNK/NLAIIKGCTMYV


Parental protein
ALFPCNECAKLIIQAGIKEVIFMSDKYHDSDEATAARLLFDMAGVTFRKFTPKCSKIVIDFDSINSRPTQKPQ
ALFPCNECA.LII.AGIKEVIFMS.KYHDSDE.TAARL.F.MA.VTFRKFT.K.SKI.IDFDSI.S.P.QK.Q
Retrocopy
ALFPCNECAQLII*AGIKEVIFMSGKYHDSDETTAARLIFNMAVVTFRKFT-KFSKIFIDFDSISSGPSQKLQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide