RetrogeneDB ID:
retro_ecab_831
Organism:
Horse ( Equus_caballus )
Location:
5:40106075-40106793 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
68.55 %
Coverage:
84.21 %
Frameshifts:
7
Stop codons:
3
Parental gene:
Parental gene symbol:
VDAC1
Parental gene aliases:
No gene alias available
Parental gene description:
voltage-dependent anion channel 1 [Source:HGNC Symbol;Acc:12669]
Genomic region (view in browser)
>retro_ecab_831
CAGAAGAGATCTGTATCTCCCATGTATGCTGATCTTGGCAAATCTGCCAAAGATGTCTTC
ACCAAGGGCTATGGATTTGGCTTAATAAAAGTTGATTTGAAAATAAAATTTTAAAATGGA
CTGGAATTTACAAATTCAGGCTCAGCCAACACTGAGATCACCCAAGGGAAAAGCAGTTTG
GACACCAGGTACAGATCGACTGAAAATGGTCTGACGTTTATGGAGAATCAGGACACGACA
ACATGTTAGACACCGAGATTATCATGGAAGATCAACTTGTACGTGGACTGGCCTGATGTT
TGATTCATCCTTCTCACCTAACAGTGTGGGGAAATAAAAGCTAATTTCAAGACAGGGTAT
AAGAGGGAGCATATCAACCTGGGCTGTGATGTGAATTTTGACATCTCTGGGCCTTCAATC
GGGGTACTCTGTGCTGAGTTGTGAGGATTGGTTGGCAGGCTATCAAATGAATTTTGAGAC
CAACACGTCCCAAGTGACCCCAGGGCAACTTTACAGTTAGCTAGAAGGCTGCTAAATTCT
AGCTTCACACTAAGGTGAACAATGAGAAAGAGTTGGTGACTCCTTTTACCAGAAGGTGAA
CAAGAAGCTGGAGACGACTGTCCATCTCACCTGGACAGCAGGAAACAGTAACATTAGCTT
AGGAATAGCAGCCAAGTATCAGATCAACCCTAACACCTGCTTCTCAACTAAAGTAAAC
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.0 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.0 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
