RetrogeneDB ID:
retro_ecab_831
Organism:
Horse ( Equus_caballus )
Location:
5:40106075-40106793 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.55 %
Coverage:
84.21 %
Frameshifts:
7
Stop codons:
3


Parental gene:
Parental gene symbol:
VDAC1
Parental gene aliases:
No gene alias available
Parental gene description:
voltage-dependent anion channel 1 [Source:HGNC Symbol;Acc:12669]

Genomic region (view in browser)





>retro_ecab_831
CAGAAGAGATCTGTATCTCCCATGTATGCTGATCTTGGCAAATCTGCCAAAGATGTCTTC
ACCAAGGGCTATGGATTTGGCTTAATAAAAGTTGATTTGAAAATAAAATTTTAAAATGGA
CTGGAATTTACAAATTCAGGCTCAGCCAACACTGAGATCACCCAAGGGAAAAGCAGTTTG
GACACCAGGTACAGATCGACTGAAAATGGTCTGACGTTTATGGAGAATCAGGACACGACA
ACATGTTAGACACCGAGATTATCATGGAAGATCAACTTGTACGTGGACTGGCCTGATGTT
TGATTCATCCTTCTCACCTAACAGTGTGGGGAAATAAAAGCTAATTTCAAGACAGGGTAT
AAGAGGGAGCATATCAACCTGGGCTGTGATGTGAATTTTGACATCTCTGGGCCTTCAATC
GGGGTACTCTGTGCTGAGTTGTGAGGATTGGTTGGCAGGCTATCAAATGAATTTTGAGAC
CAACACGTCCCAAGTGACCCCAGGGCAACTTTACAGTTAGCTAGAAGGCTGCTAAATTCT
AGCTTCACACTAAGGTGAACAATGAGAAAGAGTTGGTGACTCCTTTTACCAGAAGGTGAA
CAAGAAGCTGGAGACGACTGTCCATCTCACCTGGACAGCAGGAAACAGTAACATTAGCTT
AGGAATAGCAGCCAAGTATCAGATCAACCCTAACACCTGCTTCTCAACTAAAGTAAAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RKMAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLETKYRWTEYGLTFTEKWNT-DNTLGTEITVEDQLARGLK-
.K..V.P.YADLGKSA.DVFTKGYGFGLIK.DLK.K..NGLEFT.SGSANTE.T....SL.T.YR.TE.GLTF.E...T.DN.L.TEI..EDQL.RGL..
Retrocopy
QKRSVSPMYADLGKSAKDVFTKGYGFGLIKVDLKIKF*NGLEFTNSGSANTEITQGKSSLDTRYRSTENGLTFMENQDT/DNMLDTEIIMEDQLVRGLA/


Parental protein
LTFDSSFSPNT-GK-KNAKIKTGYKREHINLGCDVDFDIAGPSI-RGAL-VLGYEGWLAGYQMNFETAKSRVT-QSNFAVGYKTDEFQLHTNVNDGTEF-
L.FDSSFSPN..GK...A..KTGYKREHINLGCDV.FDI.GPSI.RG.L.VL..E.WLAGYQMNFET..S.VT.Q.NF.V..K...F.LHT.VN...E..
Retrocopy
LMFDSSFSPNSVGK/IKANFKTGYKREHINLGCDVNFDISGPSI/RGTL/VLSCEDWLAGYQMNFETNTSQVT\QGNFTVS*KAAKF*LHTKVNNEKEL/


Parental protein
GGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVN
G.S.YQKVNKKLET.V.L.WTAGNSN...GIAAKYQI.P..CFS.KVN
Retrocopy
GDSFYQKVNKKLETTVHLTWTAGNSNISLGIAAKYQINPNTCFSTKVN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide