RetrogeneDB ID:
retro_ecab_832
Organism:
Horse ( Equus_caballus )
Location:
5:40192806-40193237 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.79 %
Coverage:
50.53 %
Frameshifts:
4
Stop codons:
2


Parental gene:
Parental gene symbol:
VDAC1
Parental gene aliases:
No gene alias available
Parental gene description:
voltage-dependent anion channel 1 [Source:HGNC Symbol;Acc:12669]

Genomic region (view in browser)





>retro_ecab_832
CAGAATATGGCTGCATCTCCCATGTATGCTGATCTTGGCAGATCTGTCAGGGATGTCTTC
ACTAAGGGCTATGGATTTGGCTTAAAAAATTTGATTTGAAAACAAAATTTTAAAATGAAC
TGGAATTACAAACTCAGGCTCAGCCAACACTGAGACCACCCAAGTGAAAGGCAGTCTGGA
AACCAGGTACAGATGGACTGAATGTGGTCTGACATTTATGGAGAATTGGACCATGACAAC
ATGCTAAGTCACCGAGATTACCATGGAAGATCAACTTGCACGTGGACTGGCCTGATGTGT
GATTCATCCTTCTCATCTAACACTGTGGGGAAATAAAAGCTAAAATCAAGACAGGATATA
AGCTGGAGCATGGCAACTTGGGATCTGATGTGAATTTTGACAGCTCTGGGCCTTCAATCT
GCAGCACTCTA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RKMAVPPTYADLGKSARDVFTKGYGFGLI-KLDLKTKSENGLEF-TSSGSANTETTKVTGSLETKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLK
..MA..P.YADLG.S.RDVFTKGYGFGL..K.DLKTK..N.LE..T.SGSANTETT.V.GSLET.YRWTE.GLTF.E.W.......TEIT.EDQLARGL.
Retrocopy
QNMAASPMYADLGRSVRDVFTKGYGFGLK/KFDLKTKF*NELEL/TNSGSANTETTQVKGSLETRYRWTECGLTFMENWTMTTC*VTEITMEDQLARGLA


Parental protein
-LTFDSSFSPNT-GK-KNAKIKTGYKREHINLGCDVDFDIAGPSIRGAL
.L..DSSFS.NT.GK...AKIKTGYK.EH.NLG.DV.FD..GPSI...L
Retrocopy
/LMCDSSFSSNTVGK/IKAKIKTGYKLEHGNLGSDVNFDSSGPSICSTL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide