RetrogeneDB ID:
retro_ecab_835
Organism:
Horse ( Equus_caballus )
Location:
5:47562573-47562875 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
66.67 %
Coverage:
78.91 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
UBA52
Parental gene aliases:
No gene alias available
Parental gene description:
ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:RefSeq peptide;Acc:NP_001229382]

Genomic region (view in browser)





>retro_ecab_835
AAGCTAAAAATCCAAGATAAGGGAGGCCTCCTGCCTGACCAGCAGCATCTGATTTTTCTG
GGCAAACAGCTGGAAGATGGCCACAATCTTTCAGATTGCAATATGCAGAAGGAGTCCATC
CTACACTTGGTGCTTCACCTGTGGGGTCACTTCATCTAGCCTTCCCTCTGCCAGCTCACC
TAGAAATACAGCTATGACAAGATGCTCTGCTACAAGTGTTATGCTCACCTGCACCCGCAC
TCTGTCAACTGCCACAAGAAAAGTACAGCCACACCAACAAACTGTGCCCAAAGAAGGTCA
TA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKK-KCGHTNNLRPKK
K.KIQDK.G..PDQQ.LIF.GKQLEDG..LSD.N.QKES.LHLVL.L.G..I.PSL.QL..KY..DKM.C.KCYA.LHP..VNC.KK.K..HTN.L.PKK
Retrocopy
KLKIQDKGGLLPDQQHLIFLGKQLEDGHNLSDCNMQKESILHLVLHLWGHFI*PSLCQLT*KYSYDKMLCYKCYAHLHPHSVNCHKK/KYSHTNKLCPKK


Parental protein
KV
..
Retrocopy
VI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide