RetrogeneDB ID:
retro_ecab_837
Organism:
Horse ( Equus_caballus )
Location:
5:58376774-58377592 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
57.04 %
Coverage:
81.25 %
Frameshifts:
3
Stop codons:
2
Parental gene:
Parental gene symbol:
LDHA
Parental gene aliases:
No gene alias available
Parental gene description:
L-lactate dehydrogenase A chain [Source:RefSeq peptide;Acc:NP_001138352]
Genomic region (view in browser)
>retro_ecab_837
AAGGGAGAAATGATGGATCTGTAGCACAGCAGCTTATTTCTTCAGACACCTAAAATTACG
GCAGATAAAGATTATTCTGTGACGGCCAACTCTAAGATTGTGATGGTAACTGCAGGAGTC
CCTCAGCAAGAGGGACAGTCATCTCAATCTGCCGCAGCGGAATGTGAATGGCTTCAAGTT
TATTACTCTCCCGATCACTGAGTATAGTCCTAAATGCATCATAATTACGGTTTCCAACCC
AGTGGGTATTCTCACACATGTTATCTGGAAAGTAAAAGTGGATTACCCAAGCACCATGCG
ATAGGAAGCCGGTGTAATCTGGAACCTGATAGATTTCACTATCCTAGAGCTGAAAAACTT
GGCATTCATCCCAGCAGCTGCCATGGATGGATTTGGCGAGAACATGGCGACTCAAGTGTG
GCTGCGTGGAGTGGAGTGAATGTGGCAGGCGTTTCTTTCCAGACTCTGAATCCAGAGATG
AGAATGGACGATGATAGTGAAAATTGGAGAGAAGTGCACAAGATGGTGGTTGAAAGTGCC
TGTGAAGTCATCAAGCTAAAAGGATATACCAACTGGGCTATGGGGTGAAGCGGGATTGAT
CTCATTGAATCCGCGTTTAAACTCTATCCAGGATTCACCCAGCGTCAGCGATGGTGAAGG
GGACGTGGGGCATTGAGAACGAAGTCTTCCTGAGCCCTGCACGCATCCTGAATGCTGGGG
GATTAACCAACATTATCAACCAGAAGCTGAAGGCTGATGAGGTCGCTCAGCTCAAGAAAA
GTGCAGATGCCCAGTGGGACATCCAGAAGGACCTACAA
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.2 |
| SRP021940_embryo | 0.57 |
| SRP021940_placental_villous | 0.4 |
| SRP021940_synovial_membrane | 1.46 |
| SRP021940_testis | 0.18 |
Parental protein coverage
Changes in the retrocopy sequence
