RetrogeneDB ID:
retro_ecab_84
Organism:
Horse ( Equus_caballus )
Location:
15:52430436-52431117 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
77.68 %
Coverage:
99.12 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
ATP6V1E1
Parental gene aliases:
No gene alias available
Parental gene description:
ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 [Source:HGNC Symbol;Acc:857]

Genomic region (view in browser)





>retro_ecab_84
ATGGCCCTGAGTGATGTCGATGTGCAGAAGCAGATTAAGCACATGATGGCTTTCATTGAG
CAGGAAGCCAATGAGAAGGCAGAAGAAATAGATGCCAAGGCAGAGGAAGAGTTCAACATT
GAGAAAGGACGCCTCGTGCAAACCCAACGACTGAAGATTATGGAGTATTATGAGAAGAAG
GAGAAGCAGATAGAGCAGCAGAAGAAAATCCAGATGTCTACCATAAAGAATCAGGCAAGG
CTGAAAGTCCTGAGGGCTCGAGATGACCTCATCTCAGAGTTGCTGAATGAGGCGAAGCTG
AGACTCAGCAGGGTTGTAGCAGACCCAGAAATCTATCAGGGGCTGCTCGATCAGCTAGTG
CTCCAGGGACTGCTCCGGCTGCTGGAGCCCGTGGTGATTGTACGCTGCAGGCCACAGGAC
CTCCTCCTGGTGGAGGCTGCGGTGCAAAAAGCCATCCCTGATTACATATCAGTCTCCCAA
AAACGTGTGGAAGTCCGAGTTGATCAAGAGGTGCACCTGGCCATGATGGCAGCTGGAGGT
GTGGAGGTCTACAGTGGCAATCAGAGAATAAAGGTTTCCAATACCCTGGAAAGTCGGCTG
GACCTCTTAGCCCAGCAAAAGATGCCGGAAATACGAAAGGCCTTGTTTGGAGCCAACGCC
AACAGGAAGTTTTTTATCTAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.02
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.0
SRP021940_testis 21.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQ
MALSD.DVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKIQMS...NQARLKVLRARDDLI..LLNEAK.
Retrocopy
MALSDVDVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKIQMSTIKNQARLKVLRARDDLISELLNEAKL


Parental protein
RLSKVVKDTARYQVLLDGLVLQGLYQLLEPRMIVRCKKQDFPLVKAAVQKAIPMYKIATKRDVDVQIDQEAYLPEEIAGGVEIYNGDRKIKVCNTLESRL
RLS.VV.D...YQ.LLD.LVLQGL..LLEP..IVRC..QD..LV.AAVQKAIP.Y.......V.V..DQE..L....AGGVE.Y.G...IKV.NTLESRL
Retrocopy
RLSRVVADPEIYQGLLDQLVLQGLLRLLEPVVIVRCRPQDLLLVEAAVQKAIPDYISVSQKRVEVRVDQEVHLAMMAAGGVEVYSGNQRIKVSNTLESRL


Parental protein
DLIAQQMMPEVRGALFGANANRKF
DL.AQQ.MPE.R.ALFGANANRKF
Retrocopy
DLLAQQKMPEIRKALFGANANRKF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide