RetrogeneDB ID:
retro_ecab_841
Organism:
Horse ( Equus_caballus )
Location:
5:70488115-70488685 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.15 %
Coverage:
63.49 %
Frameshifts:
5
Stop codons:
0


Parental gene:
Parental gene symbol:
KATNBL1
Parental gene aliases:
No gene alias available
Parental gene description:
katanin p80 subunit B-like 1 [Source:HGNC Symbol;Acc:26199]

Genomic region (view in browser)





>retro_ecab_841
CAAACCCACAATGTTAGAAGGCAGAACTTTTGTAACAATATTGAGGATCACTCTATTGCT
ATTCCTAGAAAAAAGATCTCTAATTTCACTTATAAGAACGTTAAGGAGATTCAAGATCTC
TAACACGATTGGCTACTTACATAAATAGAACAGCTGAACATGCTGCGAAATGCCACATAA
ACTACGTAAGGCAATCGATAGCAGAAAGAAAGTTCATCAGCCTTTTCGAACTCCTTGTTA
CAGAAAAAATCAGTCCCCTAGAAGTGGAGCCTGTGACACAGCAAATAAAGATAACGAACT
GGCTTGTGCCGGCTGCCTGCCTAACAGCTATGCCGTGACAGTGGAACAGATTTGGTTAAC
TCCAGTGGTTCTTCCCAGACAGGAAGCCCATCATCCAAATACAGTGGGCTTTTTCCTTGA
GTTTTCTCAGGACCATGAGACAACGGCACAAGTTTTGCTCAGCAGGAATTTGAGACTGAA
TGTAGCTTTAACTCTCCGAAGAATGAGAAGTATAGGTGAACTTGTCACTTGTTGGTAACG
ATAGGAGATCTTGGTGTTGCTTTCTTGTGC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ETHNVKKRNFCNNIEDHYIDLPRKRISKFTNKNMKEVK-KSPKQLAAYINRTVGQAVKS-PDKLRKVIYHRKKVHHSSPNTCYRKKQSPRSGGCDMANKE
.THNV...NFCNNIEDH.I..PRK.IS.FT.KN.KE....S...LA.YINRT...A.K..P.KLRK.I..RKKVH......CYRK.QSPRSG.CD.ANK.
Retrocopy
QTHNVRRQNFCNNIEDHSIAIPRKKISNFTYKNVKEIQ/RSLTRLATYINRTAEHAAKC/PHKLRKAIDSRKKVHQPFRTPCYRKNQSPRSGACDTANKD


Parental protein
NELACAGHLPE-KLRHDSRTYLVNSSDSSSSQTESPSSKYG-GFFSEVSQDHETMAQVLFSRNLRLNVALTFWRKRSISELVA-YLVRIEDLGVVVDC
NELACAG.LP...L..DS.T.LVNS..S.SSQT.SPSSKY..GFF.E.SQDHET.AQVL.SRNLRLNVALT..R.RSI.ELV...LV.I.DLGV...C
Retrocopy
NELACAGCLPN/QLCRDSGTDLVNS--SGSSQTGSPSSKYS\GFFLEFSQDHETTAQVLLSRNLRLNVALTLRRMRSIGELVT/LLVTIGDLGVAFLC


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide