RetrogeneDB ID:
retro_ecab_842
Organism:
Horse ( Equus_caballus )
Location:
5:71480810-71481253 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
87.25 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
SSBP1
Parental gene aliases:
No gene alias available
Parental gene description:
single-stranded DNA binding protein 1, mitochondrial [Source:HGNC Symbol;Acc:11317]

Genomic region (view in browser)





>retro_ecab_842
ATGTTTCAAAAACCTGTATTACAGGTACTTCACCAATTTGTAAGACATGAACCTGAAATA
ACTAGTAGCTTGGTTCTTGAAAGATCTCTGAATCCTGTACAGTTACTTGGGCAAGTAGGT
CAGGACCCTGTCATAAGACAAGTGGAAGGAAAAAACCAGTCACAATATCTTCTCCAGCAA
CAAATGAGATGTGGCGACCAGGGGAAAGTGAAGCATATCAAATGGGTGATGTTAGTCAAA
AGACAAAGTGGCACAAAATTTCAGTATTCGGGCCGGGCCTCAGAGACGTGGCATATCAGT
ATGTAAAAAAGGGATCTCAAACTTATGTGGAAGGAAAAGTAGACTACGGTGAAGACACAG
ATAAAAACAATGTGAGGCGACAAGCAACAACAATCATAGCTGATAACATTATGTTTCTGA
GTGACCAGACAAAACAGAAGGCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.12

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MFRRPVLQVLHQFVRHESEIASSLVLERSLNRVQLLGRVGQDPVMRQVEGKN-PVTIFSLATNEMWRSGESEAYQMGDVSQKTTWHRISVFRPGLRDVAY
MF..PVLQVLHQFVRHE.EI.SSLVLERSLN.VQLLG.VGQDPV.RQVEGKN.PVTI.S.ATNEMWR.GESEAYQMGDVSQKT.WH.ISVF.PGLRDVAY
Retrocopy
MFQKPVLQVLHQFVRHEPEITSSLVLERSLNPVQLLGQVGQDPVIRQVEGKN/PVTISSPATNEMWRPGESEAYQMGDVSQKTKWHKISVFGPGLRDVAY


Parental protein
QYVKKGSRIYVEGKVDYGEYTDKNNVRRQATTIIADNIIFLSDQTKEKA
QYVKKGS..YVEGKVDYGE.TDKNNVRRQATTIIADNI.FLSDQTK.KA
Retrocopy
QYVKKGSQTYVEGKVDYGEDTDKNNVRRQATTIIADNIMFLSDQTKQKA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide