RetrogeneDB ID:
retro_ecab_843
Organism:
Horse ( Equus_caballus )
Location:
5:72531403-72531889 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
77.71 %
Coverage:
99.39 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_843
ATGCCGCCTAAATTCAACCCCAAAGAAATTCAAGTGTACCTGAGGTGCACCAGTGGGGAA
GTCAGTGCCACATCTACCCTGGCCCCCAAGATCGGCCCCCTGGGTCTGTCTCCAAAAAGA
GGTGAGTGACATCGCCAAGGCAACTGGTGATTGGAAGGGCCTGAGGATTACAGTGAAACT
GACAATTCAGAACCGTCCGGCTCAGACTGAGGAGGTAACTTCTGCCTCTGCCCTGATCAT
CAAAGCCCTCAAGGAACCACCAAGAGACAGGAAGAAGCAGAAAAACATTAAGTACAGTGA
AAATAGAACCTTTGATGATAGTGTCAACATTAGCTGACAGATGCTGCATGGTAACTGGCC
AGAGAACGCTCTGGAGCCATTAAAGAAATCCTGGGGACAGCCCAGTCTGTGGGTTGCAGT
GTTTATGGCTGCCACACTCATGACATCATACATGACATCCACAGTAGTGCAGTGGAATGC
CCAGCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.07
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.12

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGD-DIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIK
MPPKF.P.EI.V.YLRCT.GEV.ATS.LAPKIGPLGLSPK..G..DIAKATGDWKGLRITVKLTIQNR.AQ.E.V.SASALIIKALKEPPRDRKKQKNIK
Retrocopy
MPPKFNPKEIQV-YLRCTSGEVSATSTLAPKIGPLGLSPKR-GE\DIAKATGDWKGLRITVKLTIQNRPAQTEEVTSASALIIKALKEPPRDRKKQKNIK


Parental protein
HSGNITFDEIVNIARQMRHRS-LARELSGTIKEILGTAQSVGCNVDGRHPHDVIDDINNGAVECPA
.S.N.TFD..VNI..QM.H...LARE.SG.IKEILGTAQSVGC.V.G.H.HD.I.DI...AVECPA
Retrocopy
YSENRTFDDSVNIS*QMLHGN/LARERSGAIKEILGTAQSVGCSVYGCHTHDIIHDIHSSAVECPA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide