RetrogeneDB ID:
retro_ecab_844
Organism:
Horse ( Equus_caballus )
Location:
5:86200054-86200417 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
55.91 %
Coverage:
77.02 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
PRDX5
Parental gene aliases:
No gene alias available
Parental gene description:
peroxiredoxin 5 [Source:HGNC Symbol;Acc:9355]

Genomic region (view in browser)





>retro_ecab_844
GGGCAAGAGGGATCTCTCTACCCTGGGATGTCCCAAGACCATGTGCTGGGTTTGTGGACC
AGGCTGGGATGTGAAGGCCAAGGGGGTTCTAAGTCCGTGTCTGAGTGTCAGTGTCTTTGT
GACTGGTGAGCGGGAACAAGCCCACAATATGGAAGGCAAAGTTCAGCTCCTGGCTAACAC
CCTTGGGTCCTTGGGAAGGAGACAGATTTATTACTAGATGACTCATTGTAACCACTCTTT
GGAGATGAATGACTCAAGAGTTTATCCATGGTGGTAGACAACAGCGTGGTAAAGGGCCGG
AATGAGGAGCCTAATGATGCAGGCCTCACGTGCAGCCTGGCCCCCAACATCATATTGCAG
ATC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.17
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GVPGAFTPGCSKTHL-PGFVEQAAA-LKAKGVEVVACLTVNDVFVTEEWGRAHNTKGKVRLLADPTGAF-GKETDLLLDDSLVSLFGNRRLKRFSMVIED
G..G...PG.S..H...GFV.QA....KAKGV....CL.V..VFVT.E...AHN..GKV.LLA...G...GKETDLLLDDSL..LFG...LK..SMV...
Retrocopy
GQEGSLYPGMSQDHV/AGFVDQAGM/VKAKGV-LSPCLSVS-VFVTGEREQAHNMEGKVQLLANTLGSL/GKETDLLLDDSL*PLFGDE*LKSLSMVVDN


Parental protein
GIVKSLNVEPDGTGLTCSLAPNIISQL
..VK..N.EP...GLTCSLAPNII.Q.
Retrocopy
SVVKGRNEEPNDAGLTCSLAPNIILQI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide