RetrogeneDB ID:
retro_ecab_845
Organism:
Horse ( Equus_caballus )
Location:
5:90470876-90471140 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
61.29 %
Coverage:
81.82 %
Frameshifts:
3
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
Cytochrome c oxidase subunit 6A, mitochondrial [Source:UniProtKB/TrEMBL;Acc:F6RVC7]

Genomic region (view in browser)





>retro_ecab_845
ATGGGCCGGCCTCTGTTGACTGAGTGCATGGTGCGGAGGGTTCAGCTTTCAGGTGGAAGG
TTCTCACTACTTGGTCACCCGCCCCCTGGTGGGAGTGAGCAAGCAGAACACCTTCCTGAA
GTCGCATCAAGGAGAGCACCAGAGACAGTTCACTGGCTACCACCATCTCCACATCAGGCC
CAAGCCCTTTCCCTGGGGAGATGGTAACCATACTCTATTCCATAACCTCCTGCAAATCAG
CTTCTGACTGTCTGTGAAGATGAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LGRPMSSGA-HGEEGSARMWKALT-YFVALPGVGVSMLNVFLKSHQGEHERPEFVAYPHLRIRSKPFPWGDGNHTLFHN-SHVNPLPTGYEDE
.GRP......HG.EGSA..WK.LT.Y.V..P.VGVS..N.FLKSHQGEH.R..F..Y.HL.IR.KPFPWGDGNHTLFHN....N.L.T..ED.
Retrocopy
MGRPLLTEC/HGAEGSAFRWKVLT/YLVTRPLVGVSKQNTFLKSHQGEHQR-QFTGYHHLHIRPKPFPWGDGNHTLFHN/PPANQLLTVCEDD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide