RetrogeneDB ID:
retro_ecab_848
Organism:
Horse ( Equus_caballus )
Location:
5:5891644-5891903 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
52.81 %
Coverage:
88.0 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
HMGN1
Parental gene aliases:
No gene alias available
Parental gene description:
high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:4984]

Genomic region (view in browser)





>retro_ecab_848
GAAGGGATAGTAAAGAAAGAGCCCTAGAGGACATTGGCAAGGCTGTCATCTAAACCAGTT
CCTGAAGAAGTTGAAACCAAACCAAAGAGGGCAATAAGAAAGGGTAAGTGTTCTGCCAAA
AAATTGCAAATGAAAAAAGGGAGCAAACGGCAAACCGACTGAAATGGCTATCCAAGAAAC
TAAAGGCAAACGACCTGCAGAAACTGAAGAAAGTAAAAATGAGTAGCCTTCAGCCTCTAG
TTAAGCAGGAGACAGAAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EGAAKEEPKRRSARLSAKPAPAKVETKPKKVAGKDKSSDKKVQTKGKRGAK-GKQAEVANQETKEDLPAENGETKNEESAASDEAGEKE
EG..K.EP.R..ARLS.KP.P..VETKPK....K.K.S.KK.Q...K.G.K.GK..E.A.QETK...PAE..E.KNE...AS..AG...
Retrocopy
EGIVKKEP*RTLARLSSKPVPEEVETKPKRAIRKGKCSAKKLQM--KKGSK\GKPTEMAIQETKGKRPAETEESKNE*PSASS*AGDRK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide