RetrogeneDB ID:
retro_ecab_85
Organism:
Horse ( Equus_caballus )
Location:
7:82314724-82315192 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
96.12 %
Coverage:
91.49 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_85
AAGGTCTTCAACCCCGACACCGAGTTCCCAGAGTTCAGCCACCGCCTCATCAAGGACCTG
GAGAACATGTTCAAACTGTACGATGCTGGACGGGACAGCTTCATCGACCTGATGGAACTG
AAGCTGATGATGGAGAAGCTGGAGGCTCCCCAGACCCACCTGGGCCTGAAGAGCATGATC
AAGGAGGTGGACGAGGACTTTGATGGCAAACTCAGCTTCCGTGAGTTCTTGCTCATATTC
CACAAGGCCGCAGCAGGGGAGCTCCAGGAGGATAGCGGGCTGATGGCGCTGGCGAAGCTC
TCTGAAATCAATGTTGCCCTGGAGGGCGTCAAAGGTGCCAAGGAAGTCTTTGAAGCCAAG
GTCCAAGCCTTGTCCTCTGCCAGTAAGTTTGAAGCTGAGCTAAAAGCCAAACAAGATGAG
AGGAAGCAGGAGGAAGAGAAGAGGAGGCTCCGCCAGGCGGCCTTCTGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 2.03
SRP021940_cerebellum 1.64
SRP021940_embryo 0.41
SRP021940_placental_villous 3.49
SRP021940_synovial_membrane 0.49
SRP021940_testis 0.3

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
YDAGRDGFIDLMELKLMMEKLGAPQTHLGLKSMIKEVDEDFDGKLSFREFLLIFHKAAAGELQEDSGLMALAKLSEINVALEGVKGAKDFFEAKVQALSS
YDAGRD.FIDLMELKLMMEKL.APQTHLGLKSMIKEVDEDFDGKLSFREFLLIFHKAAAGELQEDSGLMALAKLSEINVALEGVKGAK..FEAKVQALSS
Retrocopy
YDAGRDSFIDLMELKLMMEKLEAPQTHLGLKSMIKEVDEDFDGKLSFREFLLIFHKAAAGELQEDSGLMALAKLSEINVALEGVKGAKEVFEAKVQALSS


Parental protein
ASKFEAELKAEQDERKQEEEKRRLRQAAF
ASKFEAELKA.QDERKQEEEKRRLRQAAF
Retrocopy
ASKFEAELKAKQDERKQEEEKRRLRQAAF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide