RetrogeneDB ID:
retro_ecab_850
Organism:
Horse ( Equus_caballus )
Location:
5:11573725-11574182 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
76.77 %
Coverage:
58.4 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
RPS4
Parental gene aliases:
No gene alias available
Parental gene description:
40S ribosomal protein S4 [Source:UniProtKB/Swiss-Prot;Acc:P55832]

Genomic region (view in browser)





>retro_ecab_850
TTTCTAAGGAACAGACTTAAGTATGCTCTGACAAGAGAAGAACTACAGAAGATTCGCATG
CAGCAGTTCGTTAAGATTGACTGCGAGGCTGGAACTGATGTAACGTACCCTGCTGGTTCA
ATAGATGTCACTAGCATTGACAAGGCTGGAGAGGATTTTTGTCTTATCCACCACACCAAG
GGTCGCTTGCCATTCATCATATTACACCTGAGGAAGCCAAGTACAAGTTATGCAAAGTTA
GGCAGATCTTTGTGGGCACAAAAGGAATCCCTCATCGGATGACCCATGATGCTCACACCA
ACCACTACCCTGATTTCTCATCAAAGTGAATGATGTGATTCAGATTGATCTGGAAACTGG
CAAGATTACTGATTTCATCAAGTTTAACACTGGTAACCTGTATATGGTGACTGGAGGTGC
TGACCTTGGAAGAATTGGTGTGATCACCAACAGAGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.09
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
FLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGR-FAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDAR
FLRNRLKYALT..E..KI.MQ.F.KID....TD.TYPAG..DV.SIDK.GE.F.LI..TKGR..A.H.ITPEEAKYKLCKVR.IFVGTKGIPH..THDA.
Retrocopy
FLRNRLKYALTREELQKIRMQQFVKIDCEAGTDVTYPAGSIDVTSIDKAGEDFCLIHHTKGR/LAIHHITPEEAKYKLCKVRQIFVGTKGIPHRMTHDAH


Parental protein
TIRYPD-PLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRE
T..YPD..LIKVND.IQIDLETGKITDFIKF.TGNL.MVTGGA.LGRIGVITNRE
Retrocopy
TNHYPD/FLIKVNDVIQIDLETGKITDFIKFNTGNLYMVTGGADLGRIGVITNRE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide