RetrogeneDB ID:
retro_ecab_852
Organism:
Horse ( Equus_caballus )
Location:
5:16045946-16046671 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
75.51 %
Coverage:
86.12 %
Frameshifts:
3
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_852
ATGAGGAGACAAAGAATATGTTCCAAGCAAAGGAATAGGATAAAACCCCAGAAAAAGAAC
AAAATGAAACAGAAAGAAATAATCTACTTGACAAAGAGTTCAAGCAAAAAGTCATAAGGA
TGCTCACTGATCTTGGGAGAAGAATGGATGAACACAGTGAGAATGTCAACAAAGAATGGG
AAAATATGTAAAAAAAAAAAATCAGAAAGGAAGAGTACAATACTGAAAATGAAAAATTCA
CTAAAGGGATTCAACTACAGAGTAGATGATACAGAAGAATGGATAAGCAAGCTGGAAGAA
AGACTAGAGGAAATCATCCAAGCTAATCAGATAAAAGAAAAAACAATTATAAAGAATGAT
AGCAGTCTAAGGGAACTCTGGGACAACAGCAAGCACACTAACATTCATATTATATGTGTT
CCAGAAGGAGAAGAGAGAGACAAAGGGGCAGAGAATCTATTTGAAGAAATAATAGCTGAA
AACTTTCCTAACTTAAGGAAAGAAACAGACATCTAAGTACAAGAATCACAGAGAGCACCA
AACAGGACAAATCCAAAGAGGCCCACACCAACAGACATTATAATTAAAATGTCCAAAATT
AAAGAGAAAGAGAGAATCCTAAAAGCTACAAGAGAAAGGCAACAAGTGACATAGAAAGGA
ACCCCATAAGGCTGTCAGCTGGCTTCTCATCAGAAACCTTGCAGGATAGAAAGGAGTGGC
ATGAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MRRQR-NMFHARVQDKTPEKELNETQRDNLPDKEFKQKGIRMLIDLGRRMDKHSENVNKELENI-KKSQSEMKSTILKMKNSLEGLNSRVDDTEEWIKKL
MRRQR.NMF.A...DKTPEKE.NET.R.NL.DKEFKQK.IRML.DLGRRMD.HSENVNKE.EN......SE.KSTILKMKNSL.G.N.RVDDTEEWI.KL
Retrocopy
MRRQR/NMFQAKE*DKTPEKEQNETERNNLLDKEFKQKVIRMLTDLGRRMDEHSENVNKEWENM\XXXXSERKSTILKMKNSLKGFNYRVDDTEEWISKL


Parental protein
DEKLEEISQVNQVKEKTILKNDSKIKELWDNIKHANIRIISVPGGEERHKGEENLFEEIIDENFPNLRKETDIQVQEEQRAPNKSSPKRPTPIHIIIKMS
.E.LEEI.Q.NQ.KEKTI.KNDS...ELWDN.KH.NI.II.VP.GEER.KG.ENLFEEII.ENFPNLRKETDI.VQE.QRAPN...PKRPTP..IIIKMS
Retrocopy
EERLEEIIQANQIKEKTIIKNDSSLRELWDNSKHTNIHIICVPEGEERDKGAENLFEEIIAENFPNLRKETDI*VQESQRAPNRTNPKRPTPTDIIIKMS


Parental protein
KIKDKERILKAARERPEVTYKG-KPIRLSADFSAETLQATREWHD
KIK.KERILKA.RER..VT.KG..PIRLSA.FS.ETLQ...EWHD
Retrocopy
KIKEKERILKATRERQQVT*KG/NPIRLSAGFSSETLQDRKEWHD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide