RetrogeneDB ID:
retro_ecab_854
Organism:
Horse ( Equus_caballus )
Location:
5:27335142-27336141 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
97.9 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
G3PDH
Parental gene aliases:
GAPDH, G3PDH
Parental gene description:
glyceraldehyde-3-phosphate dehydrogenase [Source:RefSeq peptide;Acc:NP_001157328]

Genomic region (view in browser)





>retro_ecab_854
ATGGTGAAGGTCGGAGTAAACGGATTTGGCCGTATTGGGCGCCTGGTCACCAGGGCTGCT
TTTAACTCTGGCAAAGTGGATATTGTCGCCATCAATGACCCCTTCATTGACCTCAGCTAC
ATGGTCTACATGTTTCAGTATGATTCCACCCATGGCAAGTTCCATGGCACAGTCAAGGCC
GAGCACGGGAAGCTTGTCATCAACGGAAAGGCCATCACCATCTTCCAGGAGTGAGATCCC
GCCAACATCAAATGGGGCGATGCTGGTGCTGAATATGTTGTGGAGTCCACTGGTGTCTTC
ACTACCTTGGAGAAGGCTGGGGCTCACTTGAAGGGTGGAGCCAAAAGGGTCATCATCTCT
GCTCCTTCTGCTGATGCCCCAATGTTTGTGATGGGCGTGAACCACGAGAAATATGACAAT
TCCCTGAAGATTGTCAGCAATGCCTCCTGCACCACCAATTGCTTGGCCCCCCTGGCCAAG
GTCATCCATGACCACTTTGGCATCGTGGAGGGACTCATGACCACAGTGCATGCCATCACT
GCCACCCAGAAGACCGTGGATGGCCCCGCTGGGAAGCTGTGGCGCGATGGCCGAGGGGCT
GCCCAGAACATCATCCCTGCTTCTACTGGTGCTGCCAAGGCTGTGGGCAAGGTCATCCCT
GAGCTGAATGGGAAGCTCACTGGCATGGCCTTCCGTGTCCCCACCTCTAACGTGTCAGTC
GTGGATCTGACCTGCCGCCTGGAGAAAGCTGCCAAATACGATGAGATCAAGAAGGTGGTG
AAGCAGGCATCGGAGGGCCCCCTCAAGGGCATCCTGGGCTACACTGAGGACCAGGTTGTC
TCCTGAGATTTTAACAGTGACACCCACTCTTCCACCTTCGATGCTGGGGCTGGCATTACC
CTCAACGACCACTTTGTCAAGCTCATTTCCTGGTATGACAATGAATTTGGCTACAGCAAT
AGGGTGGTGGACCTTATGGCCCACATGGCCTCCAAGGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.15
SRP021940_embryo 0.05
SRP021940_placental_villous 0.09
SRP021940_synovial_membrane 0.23
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAEHGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVF
MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDL.YMVYMFQYDSTHGKFHGTVKAEHGKLVINGKAITIFQE.DPANIKWGDAGAEYVVESTGVF
Retrocopy
MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLSYMVYMFQYDSTHGKFHGTVKAEHGKLVINGKAITIFQE*DPANIKWGDAGAEYVVESTGVF


Parental protein
TTLEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKMWRDGRGA
TTLEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGP.GK.WRDGRGA
Retrocopy
TTLEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPAGKLWRDGRGA


Parental protein
AQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA
AQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPT.NVSVVDLTCRLEKAAKYDEIKKVVKQASEGPLKGILGYTEDQVVS.DFNSDTHSSTFDAGAGI.
Retrocopy
AQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTSNVSVVDLTCRLEKAAKYDEIKKVVKQASEGPLKGILGYTEDQVVS*DFNSDTHSSTFDAGAGIT


Parental protein
LNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE
LNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE
Retrocopy
LNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide