RetrogeneDB ID:
retro_ecab_854
Organism:
Horse ( Equus_caballus )
Location:
5:27335142-27336141 (-)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
97.9 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
2
Parental gene:
Parental gene symbol:
G3PDH
Parental gene aliases:
GAPDH, G3PDH
Parental gene description:
glyceraldehyde-3-phosphate dehydrogenase [Source:RefSeq peptide;Acc:NP_001157328]
Genomic region (view in browser)
>retro_ecab_854
ATGGTGAAGGTCGGAGTAAACGGATTTGGCCGTATTGGGCGCCTGGTCACCAGGGCTGCT
TTTAACTCTGGCAAAGTGGATATTGTCGCCATCAATGACCCCTTCATTGACCTCAGCTAC
ATGGTCTACATGTTTCAGTATGATTCCACCCATGGCAAGTTCCATGGCACAGTCAAGGCC
GAGCACGGGAAGCTTGTCATCAACGGAAAGGCCATCACCATCTTCCAGGAGTGAGATCCC
GCCAACATCAAATGGGGCGATGCTGGTGCTGAATATGTTGTGGAGTCCACTGGTGTCTTC
ACTACCTTGGAGAAGGCTGGGGCTCACTTGAAGGGTGGAGCCAAAAGGGTCATCATCTCT
GCTCCTTCTGCTGATGCCCCAATGTTTGTGATGGGCGTGAACCACGAGAAATATGACAAT
TCCCTGAAGATTGTCAGCAATGCCTCCTGCACCACCAATTGCTTGGCCCCCCTGGCCAAG
GTCATCCATGACCACTTTGGCATCGTGGAGGGACTCATGACCACAGTGCATGCCATCACT
GCCACCCAGAAGACCGTGGATGGCCCCGCTGGGAAGCTGTGGCGCGATGGCCGAGGGGCT
GCCCAGAACATCATCCCTGCTTCTACTGGTGCTGCCAAGGCTGTGGGCAAGGTCATCCCT
GAGCTGAATGGGAAGCTCACTGGCATGGCCTTCCGTGTCCCCACCTCTAACGTGTCAGTC
GTGGATCTGACCTGCCGCCTGGAGAAAGCTGCCAAATACGATGAGATCAAGAAGGTGGTG
AAGCAGGCATCGGAGGGCCCCCTCAAGGGCATCCTGGGCTACACTGAGGACCAGGTTGTC
TCCTGAGATTTTAACAGTGACACCCACTCTTCCACCTTCGATGCTGGGGCTGGCATTACC
CTCAACGACCACTTTGTCAAGCTCATTTCCTGGTATGACAATGAATTTGGCTACAGCAAT
AGGGTGGTGGACCTTATGGCCCACATGGCCTCCAAGGAG
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.06 |
| SRP021940_cerebellum | 0.15 |
| SRP021940_embryo | 0.05 |
| SRP021940_placental_villous | 0.09 |
| SRP021940_synovial_membrane | 0.23 |
| SRP021940_testis | 0.06 |
Parental protein coverage
Changes in the retrocopy sequence
