RetrogeneDB ID:
retro_ecab_855
Organism:
Horse ( Equus_caballus )
Location:
5:28524203-28524806 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
73.89 %
Coverage:
71.53 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_855
TCACTAGAGGGACTCAATAGCAGAGTAGATGACACAGAAGAATGGATCAGTGAGCTGGAT
GAAAGACTAGAGGAAATCACCCAAGCTGAACAAATAAAAGAAAAAAAGAATTTAAAAAAA
TGATAACAATCTAAAGGAAATCTGGGACAACATGAAGCATACTAACATTCATATTATAGG
TGTCCCAGATGGAGAAGAGAGAGACAAAGGGGCAGAGAATCTATTTGAAGAAATAATAGC
TGAAAACTTTCCTAACCTAAGGAAGGAAACAGACATCCAGGTACAGGAAGCATAGAGAGC
ACCAAACAAGCTAAACTCAAAGAAGCCCAACCAAGACACATTATAATTAAAATGTCCAAA
ATTAAAGATAAGGAAAGAATCCCAAAAGCCACAAGAGAAAGGCAACAAGTGACATACAAA
GGAAACCCCATAAGGCTATCAGCTGACTTCTCAGCAGAAACCTTACAGGCAAGAAGGGAG
TGGCACAATATATTTAAAGTGCTAAAAGGAAAAAATCTACAGCCAAGAATACTCTATCTG
GCAAGGTTATCATTCAGAGTGGAAGGAGAGATAAAGACTTTCACAGACAAGCAAAAATTA
AAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.09
SRP021940_synovial_membrane 0.05
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SLEGLNSRVDDTEEWIKKLDEKLEEISQ-VNQVKEKTILKNDSKIKELWDNIKHANIRIISVPGGEERHKGEENLFEEIIDENFPNLRKETDIQVQEEQR
SLEGLNSRVDDTEEWI..LDE.LEEI.Q..N..........D...KE.WDN.KH.NI.II.VP.GEER.KG.ENLFEEII.ENFPNLRKETDIQVQE..R
Retrocopy
SLEGLNSRVDDTEEWISELDERLEEITQ\LNXXXXXXXXXXDNNLKEIWDNMKHTNIHIIGVPDGEERDKGAENLFEEIIAENFPNLRKETDIQVQEA*R


Parental protein
APNKSSPKRPT-PIHIIIKMSKIKDKERILKAARERPEVTYKGKPIRLSADFSAETLQATREWHDIFKVLKGKNLQPRIFYPSRSSFRMEGEIKRFPDKQ
APNK...K.P..P.HIIIKMSKIKDKERI.KA.RER..VTYKG.PIRLSADFSAETLQA.REWH.IFKVLKGKNLQPRI.Y..R.SFR.EGEIK.F.DKQ
Retrocopy
APNKLNSKKPN/PRHIIIKMSKIKDKERIPKATRERQQVTYKGNPIRLSADFSAETLQARREWHNIFKVLKGKNLQPRILYLARLSFRVEGEIKTFTDKQ


Parental protein
NVK
..K
Retrocopy
KLK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide