RetrogeneDB ID:
retro_ecab_856
Organism:
Horse ( Equus_caballus )
Location:
5:30642752-30643066 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
55.56 %
Coverage:
59.32 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_856
GTAGAAAGCATTGGAAATAAAGCAGAGCATCGGGAAGAGAAAATTAGCAAGCTTGAAGAT
AGAAATCTAGAAATGTTTCAGGTGGAAGAGGAGAGAGAACTTAGATTTTTTAAAAATGGA
GAAATTCTATGAGAAATATCTTAGTTAGTAAAAGCAACATAAGGATAATGGGTATCCCAG
AAGGAAAAAAGAGGGAGAAAGGAGCAGAGAACCTATTTAAAGAAATAATAGCTGAGAATT
TCTCAAACCTGGGGAAGAAACTGGATATACAAGTACATGAAGATAATAGAACACCTAATT
ATCTCAATGCAAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VESINNRMDQAEETC-ELEDRTFEIIQ-SEENKEKRMK-KIKDSLLEKYLTIRKSNIRIIGIPEGEEKQKDTESLFKEIIAENFPNLGKKLDLQVHEANR
VESI.N.....EE....LEDR..E..Q..EE......K.K...S.........KSNIRI.GIPEG....K..E.LFKEIIAENF.NLGKKLD.QVHE.NR
Retrocopy
VESIGNKAEHREEKISKLEDRNLEMFQVEEERELRFFK/KWRNSM--RNILVSKSNIRIMGIPEGKKREKGAENLFKEIIAENFSNLGKKLDIQVHEDNR


Parental protein
TPNYIKAK
TPNY..AK
Retrocopy
TPNYLNAK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide