RetrogeneDB ID:
retro_ecab_857
Organism:
Horse ( Equus_caballus )
Location:
5:30721795-30722118 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
69.37 %
Coverage:
85.94 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
UBA52
Parental gene aliases:
No gene alias available
Parental gene description:
ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:RefSeq peptide;Acc:NP_001229382]

Genomic region (view in browser)





>retro_ecab_857
ATGCAGATCTTTATGAAGACCTGCAGGGCAAGACTATCATTCTTGAGGTTGAGCCTAATG
ACACCAGTGAGAATGTCAAAACCAAAATCCAAGACAAGAAGGGCATCATATCTCAACAAT
GTCTGATTTTTGCAGGCAAACAGTTAGAGGATAGGCACAGTCTCACAGAGCACAATATTC
AGACAGAGTCCACAGTGTACTTGGTGCTTCACCTGTGGGGTGGCATCATCAAGCCTTCCC
TCTGCCAGCTCACCCAGAAAAACAACTGCTACAGGATGATCAGCAAGTATTATGCTCGCC
TGCACCCCTGTGCTGTCCACTGT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.15
SRP021940_embryo 0.12
SRP021940_placental_villous 0.13
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKC
MQIF.KT.L.GKTI.LEVEP.DT.ENVK.KIQDK.GI...QQ.LIFAGKQLED...L...NIQ.EST..LVL.L.GGII.PSL.QL.QK.NC..MI..K.
Retrocopy
MQIFMKT/LQGKTIILEVEPNDTSENVKTKIQDKKGII-SQQCLIFAGKQLEDRHSLTEHNIQTESTVYLVLHLWGGIIKPSLCQLTQKNNCYRMI-SKY


Parental protein
YARLHPRAVNC
YARLHP.AV.C
Retrocopy
YARLHPCAVHC


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide