RetrogeneDB ID:
retro_ecab_858
Organism:
Horse ( Equus_caballus )
Location:
5:46437211-46437926 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
50.62 %
Coverage:
99.58 %
Frameshifts:
3
Stop codons:
4


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_858
GAAAACCTAGAAAGAAGTCAAAAAGAAATTCTTGAGCTAAAAAGTATAATAACTGAAATG
AAAAATTCACTAGAGGGATTCAAAGGCAGATTTGAGCAGGCAAAAGAAAGTGTTAACAAA
TTTGAAGATAGGGCAATTAAAATTATTGAGTCTGAAGGACAGAAAGAAAAAAATTGAAGA
ATAATGAACAGAGCCCAGGCAACCATGAGACATCAACAAAAGTGAACCAACATACACATT
CTGGGACTCCCAGAAGGAGAAAACAGAGAAAAAGGGACAGAGAGATTATCTGAAGAATTA
ATGGCCAAAAACTTCCCAAGTTTGATGAAAGACACGAATATAAACATACTAGAAGCTCAA
GGAATTCCAAATTGGATGAACTCAAAGAGGTGCACACTGAGTCACATTAACATCAAACTG
TTGAAAGCCAAAGAGAGAATCTTGAAAAAGCAGTGAGAGAGAAGCGACTTGTTACATGCA
AGGGATCCTCAGTGAGATTATGAGCAGATCTCTCATCAGAAACTTTGGAGGCCAGGAGGC
AGTGGGCTGATATATTCAAAGTGCTAGAAGAAAACAATCTGTCAACCAAGAATCGTGTAT
CTGGCAAAACTGTCTTTCAAAAGTGAAGGAGAAATTAAGACATTTCCAGATAAACAAAAG
CTGAGGGAGTTTCCTTACCACTAGACCTGTCTTGCAAGAAATGTTAAAGGGGCTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.1
SRP021940_embryo 0.05
SRP021940_placental_villous 0.09
SRP021940_synovial_membrane 0.08
SRP021940_testis 0.3

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KELENIKKNQSEMKNTILEMKNSLEGLNSRVDDTEEWISKLDERLEEVIQAAQIKEKGIKKNKDSVRDLWNNIKHANIHIIRVPEGGERDKGTEKLFEEI
..LE...K...E.K..I.EMKNSLEG...R.....E...K...R....I.....KEK................K..NIHI...PEG..R.KGTE.L.EE.
Retrocopy
ENLERSQKEILELKSIITEMKNSLEGFKGRFEQAKESVNKFEDRAIKIIESEGQKEKN*RIMNRAQATMRHQQK*TNIHILGLPEGENREKGTERLSEEL


Parental protein
IA-NFPNLRKGTDIQTQEAQRAPNKINPKRPTPRHIIIKMSVIKDKERFLKATRER-KQNLTSRGSSIRFSADFPSETLEARRQWAGIFKVLKEKN-CQP
.A.NFP.L.K.T.I...EAQ..PN..N.KR.T..HI.IK....K.KER.LK...ER.K...T..GSS.R..AD..SETLEARRQWA.IFKVL.E.N.CQP
Retrocopy
MAKNFPSLMKDTNINILEAQGIPNWMNSKRCTLSHINIKL--LKAKERILKKQ*ER/KRLVTCKGSSVRL*ADLSSETLEARRQWADIFKVLEENN\CQP


Parental protein
RILRPAKLPFKSEGDIRTFPN--KLGEF-ITTRPTLRETLKGV
RI...AKL.FKSEG.I.TFP...KL.EF..TTRP.L.E.LKG.
Retrocopy
RIVYLAKLSFKSEGEIKTFPDKQKLREF\LTTRPVLQEMLKGL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide