RetrogeneDB ID:
retro_ecab_861
Organism:
Horse ( Equus_caballus )
Location:
5:59498980-59499527 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.34 %
Coverage:
74.4 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
RPS6
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S6 [Source:HGNC Symbol;Acc:10429]

Genomic region (view in browser)





>retro_ecab_861
CAACAAACAAAGCTTCCCCATGGCTGTGGCCACCTGCTACTGAGTAAGGGGCATTTCTGT
TATAGACCAAGGAGAACTGGAGAAAGAAAGCGCAAGTCTGTTCAGGGTTGCATTGTGGAT
GCCAATCTGAGTGTTCTCAACTTGGTTATTGTAAACAACAAGGAGAAGAAAATTCCTGGA
GTAATTCATACTCCTGTGCCTCATTGCCTGGGGCCCAAAGGAGCACGCAGAATCCGCAAA
CTTTTCAATCTCTCCAAAGAAGATGATGCCCACCAGTATGTTGTCAGAAAGCCCCTGAAC
AAAGAAGGTATGAAACCCAAGACCGAAGTCCCAAGATTCTGCATCTTGTTACTGCACGTA
GCCTGTAACACAAACATCAGCATGTTGCTCTGAAGAAACAGCATACTAAGAAAATTAAGG
AAGAGGCCGCAGAATATGCTAAAATTTTGGCCAAGAGAATGAAGAAAGTTGAAGAAAAAC
GCCAGGAATAGATGCCAAAAAATGGAGGCTGTCCTCTCTTAGAGCTCCCACCTCTAAATC
TGAGTCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEAGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRK
.Q..L.HG...LLLSKGH.CYRPRRTGERKRKSV.GCIVDANLSVLNLVIV......EK.IPG...T.VP..LGPK.A.RIRKLFNLSKEDD..QYVVRK
Retrocopy
QQTKLPHGCGHLLLSKGHFCYRPRRTGERKRKSVQGCIVDANLSVLNLVIVNNK---EKKIPGVIHTPVPHCLGPKGARRIRKLFNLSKEDDAHQYVVRK


Parental protein
PLNKEGKKPRT-KAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQI-AKRRRLSSLRASTSKSES
PLNKEG.KP.T...PKI..LVT.R.L.HK....ALKKQ.TKK.KEEAAEYAK.LAKRMK...EKRQE...AK..RLSSLRA.TSKSES
Retrocopy
PLNKEGMKPKT/RSPKILHLVTARSL*HKHQHVALKKQHTKKIKEEAAEYAKILAKRMKKVEEKRQE*M/AKKWRLSSLRAPTSKSES


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide