RetrogeneDB ID:
retro_ecab_862
Organism:
Horse ( Equus_caballus )
Location:
5:69095771-69097401 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
73.1 %
Coverage:
90.89 %
Frameshifts:
5
Stop codons:
10
Parental gene:
Parental gene symbol:
PAPSS1
Parental gene aliases:
No gene alias available
Parental gene description:
3'-phosphoadenosine 5'-phosphosulfate synthase 1 [Source:HGNC Symbol;Acc:8603]
Genomic region (view in browser)
>retro_ecab_862
ATGGTTTGCCTTGCTATTCCATGCTGCACTTTGGATGGTGACAACATTCATCAAGGTCTC
AATAAAAATCTTGGCTTTAGTCCTGAAGACAGAGAAGAGAATTTCAATGCATTACAGGGG
TTGCTAAACTATTTGCAGATGTGGGCTTAGTGTGCATCGCAAGTTTTATATCGCTTTATA
CTCAGGATCACAGCAATGCAAGGCAAATTCATGAGGGTGCAAATTTACCTTTTTCTAAAC
TATTTGTTGATGCTCCTAAGCATGTTTGTGGACAGAGAGATGTCAAAGAACTCTACAGAC
AAGCATGGGCTGGAGAAATTAAAGATTTCACTGGGATTGATTCTGAATGTGAAAAACCAA
GACCCCTGAATTAGTGTTGAAAATAGACTCCTGTGATATAAATGACTGCATCCAGCAAAT
TGTGAAACTTCTACAGGAATGGGATATCATACTCATGAATACCTCTTATGAAGTAAAAGA
ACTGTATGTGCCAGAAAATAAACTACATTTGTCAAAAACAGATGCAGAAACATTACTGGC
ACTGAAAATTAGTAAGTGGATATGCAGTGGGTACAGATTTTGTGGAAGGTTGGGAAACCC
CACTGAATGACTTTATGAGAGAGAAAGAGTACTTACAATGCCATCATTTCGATTGTCTTC
TGGATGGGGGTGTCATGAACTTGCCAGTGCCTATAGTTCTGATAGCTATTCATGAAGATA
AAGAGAGGCTAGATGGTCAAACAGCATTTGCTCTGATGTAGGAGGGCTGCTATCTGGCTA
TTTTTCACAGTTCAAAGTTCTTTGAGCACAGGATGGAAGAGTGCTGTGCCAGACAGTGGG
GAACAACGTGCAAGAACCAACCCTACATCAAGATGGTTATGGAACAAGGAGGTTGGCTGA
TTGGAAGAGATCTTCAAGTCTGGGACCAAGTTCATTGGAATGATGGTCTTGGTTAGTATT
GTTTTACTCCGCCCGAGCTAAAGCAGATGTTTAAAGGTATGAATGCTGATGCTATCTTTG
CATTTCAATTACATAAGCCATTGCTCAACAGACATGCTCTATTAATGCAGGATACCCATT
AGCAATTTCTAGAGAGGGGCTACTGGCACCTTGTCCTTTTCAATCACTTTCTTGATGGCT
AGACAAAGGATGATGATGTTCCTTTGGTGTAGTTCTTGAAGCAGCATGCTGCAGTGCTGA
AGGGAGGAGTTCTGAATCCTGAAACAACAGTGATGCCATTTTCCTATCTCCCATGGTGTA
TGCTGGATCACCTGATGTCCAGTGGCATTGCAGAGCACGGATGGTTGCAGGAATCAATTT
TTACATTATAGGGTGAGACCCTGAGGGTGTGCCTCGTCCAGAAGCAGGGAAGGATCTTTA
TGAACCAATTCATGACACCAAAGTGCCGACAATTGCCCCTGGCCTAATCATCTTGGAAAT
GATTGCAACTTAAAACAAGCAAAAGAAGCATATGGACTACTATGACTCTGAACACCATGA
AGACTTTGAATTTATTTCAAGAACACATATGTGCAAACTTAGCTGAGAAGGCCAGAAGTT
TCCTGAAGTTTTTGTGACTCCCAAGGCCTAGGCTGTGCTGATGGAATACTAGAAATACTT
GGAGAAAGCT
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.0 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.0 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
