RetrogeneDB ID:
retro_ecab_863
Organism:
Horse ( Equus_caballus )
Location:
5:71375919-71376198 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
65.26 %
Coverage:
55.29 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_863
CAAGTAGAAGTCATAAAGCTGAAGAATACAACTAAACTGAAAAATACACTAGAGGGATTC
AATAGCAAACTAGATGAAGCAGAAGAAAGAATCAGTGAACTCAATGACAGGGCAGTGGAA
CTCACCCAATCAGAGCAGTGAAAAGAAAAAAGAATGAAAAAAAGTAAAGTTAGTTTAAGG
GACTTATGGAACAACATCAAGCAGACTAACATTCACATTAAAGGGGTCCCAGAAGAAGAA
AAAGAGAAATGGGCAAACAACTTGTTTGAAGAGATAGTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.1
SRP021940_embryo 0.02
SRP021940_placental_villous 0.09
SRP021940_synovial_membrane 0.18
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QIEVTELKNTIPELTNTLEGFNSRLDEAEERISELNDRA-ELTQSEQQKEKRMKNTDNSLRELWDNIKHANIRIIGVPEGEERDKGAENLFVEII
Q.EV..LKNT...L.NTLEGFNS.LDEAEERISELNDRA.ELTQSEQ...........SLR.LW.NIK..NI.I.GVPE.EE..K.A.NLF.EI.
Retrocopy
QVEVIKLKNTT-KLKNTLEGFNSKLDEAEERISELNDRAVELTQSEQXXXXXXXXXXXSLRDLWNNIKQTNIHIKGVPE-EEKEKWANNLFEEIV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide