RetrogeneDB ID:
retro_ecab_867
Organism:
Horse ( Equus_caballus )
Location:
5:79448871-79449444 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.5 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
5


Parental gene:
Parental gene symbol:
RPL9
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L9 [Source:HGNC Symbol;Acc:10369]

Genomic region (view in browser)





>retro_ecab_867
ATGAAGACCATTCTCAGCAATCAAACTGTTGACATTCCAGAAAATGTTGACATCACCCAG
AAGGGACACTCAGTTATTGTGAAGTGCTGCAGAAGAACCCGGCAGAAGGACTTCAATCAC
ATCAATGTAGAACTCAGTCTCTGTGGAAAGAAAAAGAAGAGGCTCCACTTCGTTGAGAAA
TGGTGGGAAAATTGAAAGGAACTGGTACCAGCACTCCCTGTATCATGTACAGAACAGATC
CAGGGTGTTACACCGGGCTTCTGATCCAAGATGAGTTCTGCGTCTGCTCACTTCGCCATG
AATGTCATTATTTAGGAGAATGGGTATCTTGCTGAAATCCAAAATTTCTTTGGTGAAAAA
TACATCCACAGGATTTGGATGAGGCCAGGTGTTGCTTGTTGAGCATCTCAAGCCCAGAAA
GATGAGTTAATTCTTGAAGGAAATGACATTGAACTTATATCAAATTCAGTTGCTTTGATT
CAGCAAGCCACAACAGTTAAAAACAAGGATGTCAGAAAATTTTTGGATGGTATCTATCAG
CATGAAAAAAGAACAGTTCAGTAGGCTGATAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLR-VDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHF
MKTILSNQTVDIPENVDIT.KG..VIVK..R.T...DFNHINVELSL.GKKKKRL..V.KWW.N.KEL..........Q..I.GVT.GF..KM.S..AHF
Retrocopy
MKTILSNQTVDIPENVDITQKGHSVIVKCCRRTRQKDFNHINVELSLCGKKKKRLHFVEKWWEN*KELVPALPVSCTEQ--IQGVTPGF*SKMSSASAHF


Parental protein
PINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQADE
..NV.I.ENG.L.EI.NF.GEKYI.R..MRPGVAC..SQAQKDELILEGNDIEL.SNS.ALIQQATTVKNKD.RKFLDGIY..EK.TVQ.AD.
Retrocopy
AMNVII*ENGYLAEIQNFFGEKYIHRIWMRPGVAC*ASQAQKDELILEGNDIELISNSVALIQQATTVKNKDVRKFLDGIYQHEKRTVQ*ADK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide