RetrogeneDB ID:
retro_ecab_868
Organism:
Horse ( Equus_caballus )
Location:
5:84941118-84941578 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
69.81 %
Coverage:
99.37 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
RPS11
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S11 [Source:HGNC Symbol;Acc:10384]

Genomic region (view in browser)





>retro_ecab_868
AGTGACTCCTGGACTGAGCATGCCTGCCAAAGCAGCCAACCATCTTTCAAAATAGGAGGA
GGGTCCTGCTGGGAGAAACTGGCAAGAAGCTCCTGCAGTACTACAGGAACAGCGGTCTGG
GCTTCACGACACCTAAAGAGGCCAGTGAGGGCACCTACATTGACAAGAAGTGGCCTGTAC
TGGTAATGTCTCCATCCGAGGGCAGGTCCTGTCTGGCACGGTGACCAAGGTGAAGATGCA
GAGAACCATTGTCATCTTCAGGAACTACCTTTACTACATCCAAAAGTCCAGCTGCTTCGA
GAATTGCCGTAAGAACATGTCCATGCACCTGTCCCTCTGTTTCAGGGACATCTAGATCAG
TGACATTGTGGGTGAGTGCCAGCCCCTGAGCAAGACCATGTGCTACGACATGCTCAAGGT
CACCAAGGCTGCTAGCACCATGAAGCAATTCCAGAAGTTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.15
SRP021940_embryo 0.14
SRP021940_placental_villous 0.13
SRP021940_synovial_membrane 0.1
SRP021940_testis 0.12

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ADIQTERAYQ-KQPTIFQNKKRVLLGETAKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPF-TGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKY
.D..TE.A.Q.KQPTIFQN..RVLLGET.K.KL..YY.N.GLGF.TPKEA.EGTYIDKK.P..TGNVSIRG..LSG.VTK.KMQRTIVI.R.YL.YI.K.
Retrocopy
SDSWTEHACQ/KQPTIFQNRRRVLLGETGK-KLLQYYRNSGLGFTTPKEASEGTYIDKKWPV/TGNVSIRGQVLSGTVTKVKMQRTIVIFRNYLYYIQKS


Parental protein
NRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF
..FE...KNMS.HLS.CFRD..I.DI..VGEC.PLSKT.....LKVTKAA.T.KQFQKF
Retrocopy
SCFENCRKNMSMHLSLCFRDI*ISDI--VGECQPLSKTMCYDMLKVTKAASTMKQFQKF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide