RetrogeneDB ID:
retro_ecab_869
Organism:
Horse ( Equus_caballus )
Location:
5:85490237-85490720 (-)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
69.7 %
Coverage:
95.38 %
Frameshifts:
0
Stop codons:
3
Parental gene:
Parental gene symbol:
PTP4A1
Parental gene aliases:
No gene alias available
Parental gene description:
protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634]
Genomic region (view in browser)
>retro_ecab_869
ATAGCTTGAATGCACTGCTCAACTCCCACGGAAGTCACATCCAAGAACATATTTCTTATC
ACACACAATCCAACCAATAAGACCTTAAACTAAGTTACTGACACACTTAAGAAGTAAGGA
GTTACCACAATAGTAAGAGTATGTGAAGCAATGCGTGACATTGCTCTTACGGAAAAAGAA
CGCATCCATGTTCTTGACAGGCCTTTTGACGAAGGTGCACCACCATCCAACCAGATTGTT
GATGACTACTTAAGTCTTGTAAAAATCAAGTTTGGGGAAGAATCTGATTGTTGTACTGCT
CACTGTGTTGCAGGCCGTGGGACAGCTCCAGTTGCCTTCGCATTAATAGAAGGTGGAACG
AAACATGAAGACAAAGTACAGATCATAAGACAAAAGGAGCATGGAGCTTCTAACATCAAG
CAACTTTTGTATTTAGAGAAGTACCCCTCTAAAATGTGTCTGCACTGCAAAGACTTCAAT
GGC
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.23 |
| SRP021940_cerebellum | 0.05 |
| SRP021940_embryo | 0.12 |
| SRP021940_placental_villous | 0.13 |
| SRP021940_synovial_membrane | 0.05 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
