RetrogeneDB ID:
retro_ecab_87
Organism:
Horse ( Equus_caballus )
Location:
6:65062350-65063634 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
61.36 %
Coverage:
73.51 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
PCED1A
Parental gene aliases:
No gene alias available
Parental gene description:
PC-esterase domain containing 1A [Source:HGNC Symbol;Acc:16212]

Genomic region (view in browser)





>retro_ecab_87
ATGGTCCACCTGCGGGCTTCCGAAGTGCGGCAGCTGCTCCACAACAAGTTCGTGGTCATC
CTGGGGGACTCTGTCCACAGGGCCGTGTACAAGGACCTGGTGCTCCTGCTGCAGAAGGAC
TGCCTGCTCACGCCCAGCCAGCTCAAGGCCAAGGGGGAGGAGAGCTTCGAACAGGACATT
CTCTTGGAGGGAGGCCAGCTGGGCCCCATGCACAACGGCATCGAGTACCGCGAGGTCCGC
CAGTTCTGCTCCGGCCACCATCTGGTGCGCTTCTACTTCCTCACGCGCGTGTACTCCGAC
TACCTCAAGGCCATCTTGCAACAGCTGCAGTCGGGCGAGCACTTCCCAGACGTGATCATC
ATGAACTCCTGCCTCTGGGACATCTCCAGGTACGGTGAGCACTCGTGGTCGAGCTACCTG
GAGAACCTGACGAGGCTGTTTGGGCACCTGGGCCAGATGCTGCCCGAGTCGTGCCTCATG
GTGTGGAACACAGCCATGCCGCTTGGCGACAAACTCTCCGCCGGCTTTCTCCCGCCCGAG
CCCCAACCCTGGACCAACGCCCTGAAATTCAGGGTGGTCGAAGCCAATTTCTACAGCTCT
GTGGAGGCCAAGAACCACGGCTTCGACGTGCTGGACTTGCATTTCCACTTCCGCCGTGCG
CAGCAGCATCACCTGCAGCGAGACGGGGTGCACTGGGACGAGTATGCGCACCGACAGCTC
TCCCAGCTGCTGCTGGCCCACGTGGCCGACGCCTGGGGGGTGGAGCTGCCCCAACGCGAC
CCAGTGGGCAGGTGGATCAAGGACGGCCCTGCAAGAGGAGAACGTGCCCAGGGAGCTGAG
AGGCAGCCCCTGGCCCGCAGAGGTCAACGGACCTTATCTCTGCCTGGACCCTTGCCTCCT
CGCACGTGCTACCCCCTGCTCTCGCTCCCATCTCCTCGCCCACCCCTGCTCCCACTCCTG
CCCCGACAGCCTTCTCCCATCCGCTTTCACCAACCCATGCCCCAGTTTCTCCTCTGTCCC
CAAGATGCCTGTTTGTCCTCAGACCGTCCGGATCAATTCTCCTTAAGCCATTTCCATTCA
GATGGCCCCTTCGAAACTGACTTTATGTTAGGTCCCCAGCCACCTGTGCCGCCTTTCCCC
ACACCCCGTTATCATCGGCAGCGGGCCCCTGTGGTTCATAGGGGGTTTCCCCAGTATTCG
CCCCGTGGCCCGTATGGGCCCTGGAGGCAGCCCAGACCTTTCAGGAGAAGGGCCCCAGCC
CACCCAAAGCCAAGGTTTCAATAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.48
SRP021940_placental_villous 1.07
SRP021940_synovial_membrane 0.89
SRP021940_testis 3.86

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVHFQASEVQQLLHNKFVVILGDSIQRAVYKDLVLLLQKDSLLTAAQLKAKGELSFEQDQLVAGGQLGELHNGTQYREVRQFCSGSGHHLVRFYFLTRVY
MVH..ASEV.QLLHNKFVVILGDS..RAVYKDLVLLLQKD.LLT..QLKAKGE.SFEQD.L..GGQLG..HNG..YREVRQFC..SGHHLVRFYFLTRVY
Retrocopy
MVHLRASEVRQLLHNKFVVILGDSVHRAVYKDLVLLLQKDCLLTPSQLKAKGEESFEQDILLEGGQLGPMHNGIEYREVRQFC--SGHHLVRFYFLTRVY


Parental protein
SEYLEDVLEELTCGP-APDLVIINSCLWDLSRYGRCSMESYRENLERVFVRMDQVLPDSCLLVWNMAMPLGERVTGGFLLPE-QSLAGSLRRDVVEGNFY
S.YL...L..L..G...PD..I.NSCLWD.SRYG..S..SY.ENL.R.F....Q.LP.SCL.VWN.AMPLG.....GFL.PE.Q.....L...VVE.NFY
Retrocopy
SDYLKAILQQLQSGEHFPDVIIMNSCLWDISRYGEHSWSSYLENLTRLFGHLGQMLPESCLMVWNTAMPLGDKLSAGFLPPEPQPWTNALKFRVVEANFY


Parental protein
SATLAGDHFYDVLDLHFHFRHAVQHR-HRDGIHWDQHAHRHLSQLLLTHVADAWGVELPKRDYPPDPWIEDWPEPDHLFQGSQGQPPDFGEQLALPPPPP
S...A..H..DVLDLHFHFR.A.QH...RDG.HWD..AHR.LSQLLL.HVADAWGVELP.RD.P...WI.D.P......QG...QP.....Q..L..P..
Retrocopy
SSVEAKNHGFDVLDLHFHFRRAQQHHLQRDGVHWDEYAHRQLSQLLLAHVADAWGVELPQRD-PVGRWIKDGPARGERAQGAERQPLARRGQRTLSLP--


Parental protein
SPLPPPMPFP-YPLPQPSPP--PLFPPLPQDATFFPGQP
.PLPP....P...LP.P.PP..PL.P..P....F....P
Retrocopy
GPLPPRTCYPLLSLPSPRPPLLPLLPRQPSPIRFHQPMP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide