RetrogeneDB ID:
retro_ecab_870
Organism:
Horse ( Equus_caballus )
Location:
5:95628337-95628670 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
56.41 %
Coverage:
82.01 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
ADI1
Parental gene aliases:
No gene alias available
Parental gene description:
acireductone dioxygenase 1 [Source:HGNC Symbol;Acc:30576]

Genomic region (view in browser)





>retro_ecab_870
GCTGATAAACACGAGAATGATCCAGAATCAGATAAAGTCCAAAGAGAGAGAAACTACTTC
TGGATGAACATAATGACTACATGCAGAGACATACTACCAAAACAGAAAAAAAGATTAAGA
TGTTTTAGGAGGAACATTTGAATGATGCAATTTGATATATCTTGGATAGAAGTGACTATT
TTGACATAAAGATAAAGAGAACCAGTGGATCCAGATTTTCATGGAGAAAGAAGACATGCT
AACACTTCCTACAGGACTTTCTCACTGCTTCACACTGAATGAAAACAACTACGCTCTTTT
CTTCGGCTGTGTGCTGGAGAACAAGTGTGGAGC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ADKYENDPELEKIRKERNYSWMDIITICKDKLPNY-EEKIKIFYEEHLHLDDEVRYILEGSGYFDV-RDKEDKWIRIFMEKGDLITLPAGIYHRFTLDEK
ADK.ENDPE..K...ERNY.WM.I.T.C.D.LP...E.KIK.F.EE..HL.D...YIL..S.YFD...DKE..WI.IFMEK.D..TLP.G..H.FTL.E.
Retrocopy
ADKHENDPESDKVQRERNYFWMNIMTTCRDILPKQ/EKKIKMF*EE--HLNDAI*YILDRSDYFDI/KDKENQWIQIFMEKEDMLTLPTGLSHCFTLNEN


Parental protein
NYV-KAMRLFVGEPVWT
NY.....RL..GE.VW.
Retrocopy
NYA/SFLRLCAGEQVWS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide